View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_47 (Length: 293)
Name: NF21347_low_47
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 13183788 - 13183903
Alignment:
| Q |
33 |
gcctcatggctggggctacgcgtgcagtgcgtgctaaaaacaatgtttttcaacactgtttcatgcaccagggacacatggcagcactcccaagacttta |
132 |
Q |
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| T |
13183788 |
gcctcacggctggggctacgcgtgcagtgcgtgctaaaaagaatgtttttcaacactgtttcacgcaccagggacacatggcagcactcacaaggc-tta |
13183886 |
T |
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| Q |
133 |
tgtcttcatcttataat |
149 |
Q |
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| T |
13183887 |
tgtcttcatcttttaat |
13183903 |
T |
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Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 13183963 - 13184034
Alignment:
| Q |
205 |
tatcaaccatataaatactataccataaaaagtagtgggggcagttgtccccaatctacactaagtaactcc |
276 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13183963 |
tatcaaccgtataaataatataccataaaaagtagtgggggcagttgtccccaatctacactaagtaactcc |
13184034 |
T |
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