View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_50 (Length: 288)
Name: NF21347_low_50
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 7739302 - 7739565
Alignment:
| Q |
5 |
aggcatttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagag |
104 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
7739302 |
aggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgttaaactgggaaagag |
7739401 |
T |
|
| Q |
105 |
acggtagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739402 |
acggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggat |
7739501 |
T |
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| Q |
205 |
cgacccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagag |
268 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7739502 |
cgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgctgaaagag |
7739565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 7726984 - 7727247
Alignment:
| Q |
5 |
aggcatttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagag |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7726984 |
aggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacattaaactgcgaaagag |
7727083 |
T |
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| Q |
105 |
acggtagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggat |
204 |
Q |
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| T |
7727084 |
acggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
7727183 |
T |
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| Q |
205 |
cgacccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagag |
268 |
Q |
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|| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |
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| T |
7727184 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagag |
7727247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 7731144 - 7731407
Alignment:
| Q |
5 |
aggcatttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7731144 |
aggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacattaaactgcgaaagag |
7731243 |
T |
|
| Q |
105 |
acggtagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggat |
204 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7731244 |
acggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
7731343 |
T |
|
| Q |
205 |
cgacccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagag |
268 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||| |
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| T |
7731344 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctaaaagag |
7731407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 7713467 - 7713730
Alignment:
| Q |
5 |
aggcatttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagag |
104 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||| |
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| T |
7713467 |
aggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattgaactgcgaaagag |
7713566 |
T |
|
| Q |
105 |
acggtagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggat |
204 |
Q |
| |
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|| ||||| | ||| ||||||||||||| |||||| |||||||||||| |||||||||| ||| || | || |||||||| ||| || || ||||| |
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| T |
7713567 |
actgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgcccagaaattcagggat |
7713666 |
T |
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| Q |
205 |
cgacccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagag |
268 |
Q |
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| ||||||||| |||||||| ||||||||||| ||| |||||||| |||||||||||||||| |
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| T |
7713667 |
tggcccactaaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaagag |
7713730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 7699122 - 7699385
Alignment:
| Q |
5 |
aggcatttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagag |
104 |
Q |
| |
|
|||||||||||||| |||||| | |||| |||||| ||||||||| ||| || |||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
7699122 |
aggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacattaaactgcgaaagag |
7699221 |
T |
|
| Q |
105 |
acggtagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggat |
204 |
Q |
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| ||||| ||||| |||||||||||| |||| ||||||||||||||||||||||| ||||| || || |||||||| |||||| || | |||||| |
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| T |
7699222 |
attgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgcctagaaaggaggggat |
7699321 |
T |
|
| Q |
205 |
cgacccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagag |
268 |
Q |
| |
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| ||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||||| |
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| T |
7699322 |
tggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctaaaagag |
7699385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 12908352 - 12908132
Alignment:
| Q |
5 |
aggcatttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagag |
104 |
Q |
| |
|
|||||||||||||| |||||| |||||| | ||||| ||||||||||||| ||||||||||| || |||||| |||| ||||| ||||| || |||| |
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| T |
12908352 |
aggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactgggagagag |
12908253 |
T |
|
| Q |
105 |
acggtagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggat |
204 |
Q |
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||||||||| | ||| |||||| ||||||||||||| ||||||||||||||||||||||| ||| | ||||| ||||||| |||||||||| |||||||| |
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| T |
12908252 |
acggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtggggat |
12908153 |
T |
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| Q |
205 |
cgacccactaagactgttgga |
225 |
Q |
| |
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|| |||||||| ||||||| |
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| T |
12908152 |
cgggccactaaggttgttgga |
12908132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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