View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21347_low_51 (Length: 288)

Name: NF21347_low_51
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21347_low_51
NF21347_low_51
[»] chr4 (7 HSPs)
chr4 (59-280)||(4337092-4337313)
chr4 (59-280)||(4319177-4319407)
chr4 (72-278)||(4122538-4122747)
chr4 (173-280)||(4132616-4132720)
chr4 (60-280)||(4346553-4346779)
chr4 (66-123)||(4132515-4132572)
chr4 (173-280)||(4362742-4362849)
[»] chr6 (7 HSPs)
chr6 (173-286)||(5065447-5065560)
chr6 (178-258)||(5253745-5253825)
chr6 (173-279)||(5177930-5178036)
chr6 (173-279)||(5279755-5279861)
chr6 (173-278)||(5126627-5126732)
chr6 (173-279)||(5346220-5346326)
chr6 (173-279)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (173-286)||(36212919-36213032)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 59 - 280
Target Start/End: Complemental strand, 4337313 - 4337092
Alignment:
Q  59 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337313 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 4337214  T
Q  159 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337213 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 4337114  T
Q  259 catatttgataccactctctgc 280  Q
    ||||||||||||||||||||||    
T  4337113 catatttgataccactctctgc 4337092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 59 - 280
Target Start/End: Original strand, 4319177 - 4319407
Alignment:
Q  59 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 158  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||||||||||| ||||||  | ||||| |||||||||| |||||||| ||||||||    
T  4319177 aaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcaccgatatcaacaagaacattcttatctggtgtatgacatt 4319276  T
Q  159 gctcaaatttttcg---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatc 249  Q
    |||| ||| |||||         |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||| || || ||    
T  4319277 gctccaatatttcgacgactggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtc 4319376  T
Q  250 accaggttccatatttgataccactctctgc 280  Q
    ||||||||||||||||| ||| |||||||||    
T  4319377 accaggttccatatttgttacaactctctgc 4319407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 278
Target Start/End: Original strand, 4122538 - 4122747
Alignment:
Q  72 gctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattgctcaaatttttc 171  Q
    |||||||||| ||||||| |||||||||||| |||||||||| | ||||||   ||||   |||||||| || ||||||||| |||||||| | ||||||    
T  4122538 gctctacttgcagagagaccctcttggcagcgcattcattttcagcaccac---caac---aacattcttatttggtgcatggcattgctctattttttc 4122631  T
Q  172 g---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccata 262  Q
              |||| ||||||||||||||||| |||| ||||||||||  ||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  4122632 accgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccata 4122731  T
Q  263 tttgataccactctct 278  Q
    ||||||||||||||||    
T  4122732 tttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 280
Target Start/End: Original strand, 4132616 - 4132720
Alignment:
Q  173 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 272  Q
    |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||||   |||||||||||||| ||||||||||||||||||||||| |    
T  4132616 tcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaaca---acaatctcgactttgtcaccaggttccatatttgatacta 4132712  T
Q  273 ctctctgc 280  Q
    ||||||||    
T  4132713 ctctctgc 4132720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 280
Target Start/End: Complemental strand, 4346779 - 4346553
Alignment:
Q  60 aatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattg 159  Q
    |||||||||  | |||||||||| |||| |||||||||| ||  |||||||||| ||||||||   |||| | |||||||  ||||||||||| ||| ||    
T  4346779 aatcatctgtggactctacttgaggagaaatcctcttggaagagcattcattttcatcaccac---caacaataacattcatatctggtgcatcacaatg 4346683  T
Q  160 ctcaaatttttcgtca---------tgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatca 250  Q
     || | ||||||||||         | ||||||||||||||||| |||| || |||||||   | ||||| | | ||||||||| ||||| ||||| |||    
T  4346682 gtctattttttcgtcaattggttcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccataacaacaactatctccactttgtca 4346583  T
Q  251 ccaggttccatatttgataccactctctgc 280  Q
    |||||||||||||| |||| || |||||||    
T  4346582 ccaggttccatattcgatatcattctctgc 4346553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 4132515 - 4132572
Alignment:
Q  66 ctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccact 123  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  4132515 ctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcaccact 4132572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 4362849 - 4362742
Alignment:
Q  173 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 272  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | |  |||| ||| ||||| ||||| |||||||||||||||||||||| ||    
T  4362849 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccattacaataactatctccactttgtcaccaggttccatatttgatatca 4362750  T
Q  273 ctctctgc 280  Q
    ||||||||    
T  4362749 ctctctgc 4362742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 286
Target Start/End: Original strand, 5065447 - 5065560
Alignment:
Q  173 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 272  Q
    |||| ||||||||||||||||||||||||| ||||||   ||| |||| |||||||||||||||  || |||||||  |||||||| ||| ||||||| |    
T  5065447 tcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatacta 5065546  T
Q  273 ctctctgctcctcc 286  Q
    |||||||| |||||    
T  5065547 ctctctgcccctcc 5065560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 5253825 - 5253745
Alignment:
Q  178 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 258  Q
    |||||||||||||||||| |||||| |||||||  |||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  5253825 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttc 5253745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 5178036 - 5177930
Alignment:
Q  173 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 272  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5178036 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5177937  T
Q  273 ctctctg 279  Q
    |||||||    
T  5177936 ctctctg 5177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 5279861 - 5279755
Alignment:
Q  173 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 272  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5279861 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5279762  T
Q  273 ctctctg 279  Q
    |||||||    
T  5279761 ctctctg 5279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 5126627 - 5126732
Alignment:
Q  173 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 272  Q
    |||| ||||||||||||||| | |||| || |||||||  ||| ||||  |||||||||||||||||| ||||| | ||||| ||| ||| ||||||| |    
T  5126627 tcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatacta 5126726  T
Q  273 ctctct 278  Q
    ||||||    
T  5126727 ctctct 5126732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 5346326 - 5346220
Alignment:
Q  173 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 272  Q
    |||| |||||||||||||| || |||| || |||||||  |||  ||| ||| |||||| |||| ||| ||||| | ||||||||| ||| ||||||| |    
T  5346326 tcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaa 5346227  T
Q  273 ctctctg 279  Q
    |||||||    
T  5346226 ctctctg 5346220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 5688901 - 5689007
Alignment:
Q  173 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 272  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||  ||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5688901 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 5689000  T
Q  273 ctctctg 279  Q
    |||||||    
T  5689001 ctctctg 5689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 286
Target Start/End: Original strand, 36212919 - 36213032
Alignment:
Q  173 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 272  Q
    |||| ||| ||||||||||  | |||| || |||||||  || ||||| ||||||||||||||| ||| | ||||||||||||||| ||| ||||||| |    
T  36212919 tcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatacta 36213018  T
Q  273 ctctctgctcctcc 286  Q
     ||||||| |||||    
T  36213019 atctctgcccctcc 36213032  T

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