View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_52 (Length: 281)
Name: NF21347_low_52
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_52 |
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| [»] scaffold1107 (1 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 31037495 - 31037252
Alignment:
| Q |
22 |
atagaagctagtctaatcaacaatgaagaagatgggcaccatgttccttagttgcttgtgctacaagtaattgaagcttaggcagttttagagttagtta |
121 |
Q |
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| T |
31037495 |
atagaagctagtttactcaacaatgaagaagatgagcaccatgttccttagttacttgtgctacaagtaattgaagcttaggcagttttagggttagtta |
31037396 |
T |
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| Q |
122 |
ttagttctaactaactttgttgaattgtaggagaagtttgttaagatagagtgaagtagagatcacaatagcatatcatgatccttcattaacaaactgt |
221 |
Q |
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| T |
31037395 |
ttagtagtaactaacttagcagaattgt---acaagtttgttatgatagagtgaagtagagataacaatagcatatcatgatccttcactaacaaac--t |
31037301 |
T |
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| Q |
222 |
atatacatgtaatagcttcagttacaagttaaatgtgatattctctcatt |
271 |
Q |
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| T |
31037300 |
atatacatgtaatagcttcagttacaag-tcaatgtgaaattctctcatt |
31037252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1107 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1107
Description:
Target: scaffold1107; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 271
Target Start/End: Complemental strand, 863 - 700
Alignment:
| Q |
106 |
gttttagagttagttattagttctaactaactttgttgaattgtaggagaagtttgttaagatagagtgaagtagagatcacaatagcatatcatgatcc |
205 |
Q |
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||||| |||||||||| ||| |||||||||| | ||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| |
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| T |
863 |
gttttggagttagttaagagtagtaactaacttagctgaattgtaggagaagtttgttatgttagagtgaagt-gagatcacaatagcataacatgatcc |
765 |
T |
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| Q |
206 |
ttcattaacaaactgtatatacatgtaatagcttcagttacaagttaaatgtgatattctctcatt |
271 |
Q |
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| T |
764 |
tttactaacaaactataaatacttgtaataacttccttttcaagtt-aatgtgaaattctcccatt |
700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 106 - 271
Target Start/End: Complemental strand, 14924 - 14761
Alignment:
| Q |
106 |
gttttagagttagttattagttctaactaactttgttgaattgtaggagaagtttgttaagatagagtgaagtagagatcacaatagcatatcatgatcc |
205 |
Q |
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||||| |||||||||| ||| |||| ||||| | |||||||||||| |||||||||| | ||||||||||| ||||||||||||||||| |||||||| |
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| T |
14924 |
gttttggagttagttaagagtagtaaccaacttagctgaattgtaggaaaagtttgttatgttagagtgaagt-gagatcacaatagcataacatgatcc |
14826 |
T |
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| Q |
206 |
ttcattaacaaactgtatatacatgtaatagcttcagttacaagttaaatgtgatattctctcatt |
271 |
Q |
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| T |
14825 |
tttactaactaactataaatacttgtaataacttccttttcaagtt-aatgtgaaattctcccatt |
14761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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