View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21347_low_53 (Length: 277)

Name: NF21347_low_53
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21347_low_53
NF21347_low_53
[»] chr3 (15 HSPs)
chr3 (7-274)||(28006762-28007029)
chr3 (80-177)||(27351032-27351129)
chr3 (52-174)||(28085933-28086055)
chr3 (92-177)||(27381060-27381144)
chr3 (94-166)||(19482105-19482177)
chr3 (91-158)||(19478351-19478418)
chr3 (80-198)||(26631594-26631709)
chr3 (99-161)||(27387678-27387740)
chr3 (99-165)||(2978511-2978578)
chr3 (65-120)||(27981372-27981427)
chr3 (98-165)||(2168927-2168995)
chr3 (98-165)||(3110784-3110852)
chr3 (98-165)||(13990647-13990715)
chr3 (98-165)||(23344191-23344259)
chr3 (98-165)||(40800914-40800982)
[»] scaffold0043 (2 HSPs)
scaffold0043 (80-177)||(50557-50654)
scaffold0043 (93-165)||(46254-46326)
[»] scaffold1805 (1 HSPs)
scaffold1805 (93-172)||(186-265)
[»] scaffold1163 (1 HSPs)
scaffold1163 (99-161)||(1297-1359)
[»] chr2 (4 HSPs)
chr2 (101-161)||(22395893-22395953)
chr2 (98-165)||(636097-636165)
chr2 (98-165)||(22430163-22430231)
chr2 (98-165)||(22435757-22435825)
[»] chr5 (4 HSPs)
chr5 (99-165)||(25365670-25365737)
chr5 (99-165)||(25365943-25366010)
chr5 (98-165)||(19780291-19780359)
chr5 (98-165)||(28367257-28367325)
[»] scaffold0054 (1 HSPs)
scaffold0054 (96-165)||(67671-67740)
[»] chr7 (6 HSPs)
chr7 (99-165)||(29185341-29185408)
chr7 (98-165)||(16648238-16648306)
chr7 (98-165)||(17622599-17622667)
chr7 (98-165)||(25498870-25498938)
chr7 (98-165)||(32148292-32148360)
chr7 (98-165)||(42162531-42162599)
[»] scaffold0004 (1 HSPs)
scaffold0004 (98-165)||(345947-346015)
[»] chr4 (4 HSPs)
chr4 (98-165)||(2924190-2924258)
chr4 (98-165)||(6162064-6162132)
chr4 (98-165)||(12746848-12746916)
chr4 (98-165)||(53981910-53981978)
[»] chr1 (1 HSPs)
chr1 (98-165)||(15716439-15716507)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 28007029 - 28006762
Alignment:
Q  7 tccaagaatattatacaaataaatattaaaaataaaatacacttgggggacaaggtctatcaataaacaaagaaataacattgggatacaactgcctcat 106  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28007029 tccaataatattatacaaataaatattaaaaagaaaatacacttgggggacaaggtctatcaataaacaaagaaataacattgggatacaactgcctcat 28006930  T
Q  107 taaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagagtgcaacactaagcgtatgttataaacaaaacgacattnnnnnnnc 206  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |    
T  28006929 taaaaaccttacctataaaacccagtaggataaaaccaggggaaggaaaaaagagtgcagcactaagcgtatgttataaacaaaacgacattaaaaaaac 28006830  T
Q  207 tataatcatgattccctagcctacttttgtgttgggggtatcttgtttcttcttaaaatgtaggaaac 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28006829 tataatcatgattccctagcctacttttgtgttggggatatcttgtttcttcttaaaatgtaggaaac 28006762  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 27351129 - 27351032
Alignment:
Q  80 aataacattgggatacaactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagagtgcaacactaagcgta 177  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||| |||||    
T  27351129 aataacagtgtgatacaactgcctcattaaaaaccttacctgtaaaacccaatgggataaaaccaggtgaaggaaaaaagagtgcagcactaggcgta 27351032  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 28086055 - 28085933
Alignment:
Q  52 ggggacaaggtctatcaataaacaaagaaataacattgggatacaactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaag 151  Q
    |||||| ||| ||||||||| |||| | ||||||| | ||||||||||||||||||||||||||||||||||||| | || |||||||||| ||| ||||    
T  28086055 ggggactaggcctatcaatacacaacggaataacaataggatacaactgcctcattaaaaaccttacctgtaaaacctaaaaggataaaactaggtgaag 28085956  T
Q  152 gaaaaaagagtgcaacactaagc 174  Q
    | |||||||| ||| ||||||||    
T  28085955 ggaaaaagagcgcagcactaagc 28085933  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 27381144 - 27381060
Alignment:
Q  92 atacaactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagagtgcaacactaagcgta 177  Q
    ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  27381144 atacaactgcctcattaaaaaccttac-tgtaaaacccaatgggataaaaccaggtgaaggaaaaaagagtgcagcactaagcgta 27381060  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 19482105 - 19482177
Alignment:
Q  94 acaactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagagtgcaa 166  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  19482105 acaactgcctcattaaaaaccttgcctgtaaaacccaatgggataaaaccaggtgaaggaaaaaagagtgcaa 19482177  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 19478418 - 19478351
Alignment:
Q  91 gatacaactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaa 158  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19478418 gatacaattgcctcattaaaaaccttacctgtaaaacccaataggataaaaccaggtgaaggaaaaaa 19478351  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 26631709 - 26631594
Alignment:
Q  80 aataacattgggatacaactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagagtgcaacactaagcgtatg 179  Q
    ||||||| || |||||| |||| |||||||||||||||| ||||||| ||||| ||||||||||||  |||||||||||||| |||  ||||||| ||      
T  26631709 aataacaatgtgatacatctgcatcattaaaaaccttacttgtaaaacccaatgggataaaaccagatgaaggaaaaaagagcgcagtactaagctta-- 26631612  T
Q  180 ttataaacaaaacgacatt 198  Q
      |||||||||||||||||    
T  26631611 -cataaacaaaacgacatt 26631594  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 27387678 - 27387740
Alignment:
Q  99 tgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagag 161  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||  ||||||||||||||    
T  27387678 tgcctcattaaaaaccttacctgtaaaacccaatgggataaaaccagatgaaggaaaaaagag 27387740  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 2978511 - 2978578
Alignment:
Q  99 tgcctcattaaaaaccttacctgtaaaatccaataggataaaacc-aggggaaggaaaaaagagtgca 165  Q
    |||||| |||||||||||||| | |||| ||||| ||||||||||  || ||||||||||||||||||    
T  2978511 tgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaaaaaagagtgca 2978578  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 27981427 - 27981372
Alignment:
Q  65 atcaataaacaaagaaataacattgggatacaactgcctcattaaaaaccttacct 120  Q
    ||||||| |||| | ||||||| ||  |||||||||||||||||||||||||||||    
T  27981427 atcaatacacaagggaataacagtgtcatacaactgcctcattaaaaaccttacct 27981372  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 2168927 - 2168995
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  2168927 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 2168995  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 3110784 - 3110852
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  3110784 ctgcctcgttaaaaaccttaccagaaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 3110852  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 13990715 - 13990647
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  13990715 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 13990647  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 23344259 - 23344191
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  23344259 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 23344191  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 40800914 - 40800982
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  40800914 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 40800982  T

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Target: scaffold0043 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 50557 - 50654
Alignment:
Q  80 aataacattgggatacaactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagagtgcaacactaagcgta 177  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||| |||||||||||    
T  50557 aataacagtgtgatataactgcctcattaaaaaccttacctgtaaaacccaatgggttaaaaccaggtgaaggaaaaaagagtgcagcactaagcgta 50654  T

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Target: scaffold0043; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 46326 - 46254
Alignment:
Q  93 tacaactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagagtgca 165  Q
    |||| ||||||||||||||||||||||||| |||||||||  ||||||||||||  |||||||||||||||||    
T  46326 tacagctgcctcattaaaaaccttacctgtgaaatccaatgagataaaaccaggtaaaggaaaaaagagtgca 46254  T

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Target: scaffold1805 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 265 - 186
Alignment:
Q  93 tacaactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagagtgcaacactaa 172  Q
    ||||||||||||||||||||||||||||||||||| |||| | || |||||||| |||||||||||||||||| ||||||    
T  265 tacaactgcctcattaaaaaccttacctgtaaaattcaatggaatgaaaccaggtgaaggaaaaaagagtgcagcactaa 186  T

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Target: scaffold1163 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 1359 - 1297
Alignment:
Q  99 tgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagag 161  Q
    |||||||||||||||||||||||||||| ||||| ||| |||| |||| ||||||||||||||    
T  1359 tgcctcattaaaaaccttacctgtaaaacccaatgggacaaaagcaggtgaaggaaaaaagag 1297  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 22395953 - 22395893
Alignment:
Q  101 cctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagag 161  Q
    ||||||||||||||| |||||||||| ||||| ||| ||||||||| ||||||||||||||    
T  22395953 cctcattaaaaacctaacctgtaaaacccaatgggacaaaaccaggtgaaggaaaaaagag 22395893  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 636165 - 636097
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  636165 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 636097  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 22430231 - 22430163
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  22430231 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 22430163  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 22435825 - 22435757
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  22435825 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 22435757  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 25365670 - 25365737
Alignment:
Q  99 tgcctcattaaaaaccttacctgtaaaatccaataggataaaacc-aggggaaggaaaaaagagtgca 165  Q
    ||||||||||||||||||||| | |||| ||||| ||||||||||  || ||||||||||||||||||    
T  25365670 tgcctcattaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaaaaaagagtgca 25365737  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 25365943 - 25366010
Alignment:
Q  99 tgcctcattaaaaaccttacctgtaaaatccaataggataaaacc-aggggaaggaaaaaagagtgca 165  Q
    ||||||||||||||||||||| | |||| ||||| ||||||||||  || ||||||||||||||||||    
T  25365943 tgcctcattaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaaaaaagagtgca 25366010  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 19780291 - 19780359
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||||||||| ||||||||||| ||  |||| ||||||||||||    
T  19780291 ctgcctcgttaaaaaccttaccagaaaaatccaatgggataaaaccatggttaagggaaaaagagtgca 19780359  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 28367257 - 28367325
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  28367257 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 28367325  T

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Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 67671 - 67740
Alignment:
Q  96 aactgcctcattaaaaaccttacctgtaaaatccaataggataaaaccaggggaaggaaaaaagagtgca 165  Q
    ||||| ||| |||||||||||| |   ||||||||||||||||||||  || ||||||||||||||||||    
T  67671 aactgtctcgttaaaaaccttaacaagaaaatccaataggataaaacttggtgaaggaaaaaagagtgca 67740  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 29185408 - 29185341
Alignment:
Q  99 tgcctcattaaaaaccttacctgtaaaatccaataggataaaacc-aggggaaggaaaaaagagtgca 165  Q
    |||||| |||||||||||||| | |||| ||||| ||||||||||  || ||||||||||||||||||    
T  29185408 tgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaaaaaagagtgca 29185341  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 16648306 - 16648238
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  16648306 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 16648238  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 17622667 - 17622599
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  17622667 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 17622599  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 25498938 - 25498870
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  25498938 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 25498870  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 32148360 - 32148292
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  32148360 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 32148292  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 42162531 - 42162599
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  42162531 ctgcctcgttaaaaaccttaccagaaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 42162599  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 345947 - 346015
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  345947 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 346015  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 2924190 - 2924258
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    |||||||||||||||||||||| | |||| ||| | ||||||||| | ||  |||||||||||||||||    
T  2924190 ctgcctcattaaaaaccttaccaggaaaacccagtgggataaaactatggttaaggaaaaaagagtgca 2924258  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 6162132 - 6162064
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  6162132 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 6162064  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 12746848 - 12746916
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    |||||||||||||||||||||| | |||| ||| | ||||||||||| ||  |||| ||||||||||||    
T  12746848 ctgcctcattaaaaaccttaccagaaaaacccagtgggataaaaccatggttaagggaaaaagagtgca 12746916  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 53981978 - 53981910
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  53981978 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 53981910  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 15716507 - 15716439
Alignment:
Q  98 ctgcctcattaaaaaccttacctgtaaaatccaataggataaaacca-ggggaaggaaaaaagagtgca 165  Q
    ||||||| |||||||||||||| | |||| ||||| ||||||||||| ||  |||| ||||||||||||    
T  15716507 ctgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccatggttaagggaaaaagagtgca 15716439  T

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