View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21347_low_55 (Length: 271)

Name: NF21347_low_55
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21347_low_55
NF21347_low_55
[»] chr2 (2 HSPs)
chr2 (18-176)||(17790396-17790549)
chr2 (205-238)||(21383726-21383759)
[»] chr7 (1 HSPs)
chr7 (207-241)||(24612763-24612797)
[»] chr4 (1 HSPs)
chr4 (208-237)||(43536773-43536802)
[»] chr6 (1 HSPs)
chr6 (207-239)||(6312016-6312048)


Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 17790396 - 17790549
Alignment:
Q  18 agaatgacggcaagtggacgcagtgtaacagtttcttttcaacatatatgctttcatgatacagagaagctgcaggttcaagccctgtgagtcccgatgg 117  Q
    ||||||||| ||| ||||  ||||||||||||| ||||||||||||||||||||||| |||||||||||      ||||||||||| |||||||||||||    
T  17790396 agaatgacgacaaatggatccagtgtaacagttccttttcaacatatatgctttcataatacagagaaga-----gttcaagccctctgagtcccgatgg 17790490  T
Q  118 atacaaatcaaatccagatgttaattaagtttaaagataaaccatttgacgactcaagt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17790491 atacaaatcaaatccagatgttaattaagtttaaagataaaccatttgacgactcaagt 17790549  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 21383759 - 21383726
Alignment:
Q  205 tttgttaaagagtctcacatcggataaaagatgg 238  Q
    |||||||| |||||||||||||||||||||||||    
T  21383759 tttgttaaggagtctcacatcggataaaagatgg 21383726  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 24612763 - 24612797
Alignment:
Q  207 tgttaaagagtctcacatcggataaaagatggtat 241  Q
    |||||||||||||||||||||||||||||| ||||    
T  24612763 tgttaaagagtctcacatcggataaaagattgtat 24612797  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 43536802 - 43536773
Alignment:
Q  208 gttaaagagtctcacatcggataaaagatg 237  Q
    ||||||||||||||||||||||||||||||    
T  43536802 gttaaagagtctcacatcggataaaagatg 43536773  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 6312016 - 6312048
Alignment:
Q  207 tgttaaagagtctcacatcggataaaagatggt 239  Q
    |||||||||||||||||||||| ||||||||||    
T  6312016 tgttaaagagtctcacatcggacaaaagatggt 6312048  T

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