View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_63 (Length: 254)
Name: NF21347_low_63
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 34385614 - 34385455
Alignment:
| Q |
1 |
aagctgcctgctgctatattccagagattgacatttagttatggagtattttattggcggcatatatacaataagactgccaatctaatgcnnnnnnnnn |
100 |
Q |
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| T |
34385614 |
aagctgcctgctgctatattccagagattgacatttagttatggagtattttatcggcggcatatatacaataagacggccaatctaatgcaaaaaaaaa |
34385515 |
T |
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| Q |
101 |
ttattaaaacttcattcactgaatataacgcacaagtctatgtacattcagggcacaaga |
160 |
Q |
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| T |
34385514 |
ttattaaaacttcattcactgaatataacgcacaagtctatgtacattcagggcacaaga |
34385455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 34385429 - 34385348
Alignment:
| Q |
156 |
caagaatggtataaaacaactagaggtctgttattggctccttcggggctcttgtatgtaaggagttttcactaacattaat |
237 |
Q |
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| T |
34385429 |
caagaatggtattaaacaactagaggtctgttattggctccttcggggctcttgtatgtaaggagttttcactaacattaat |
34385348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 9879169 - 9879242
Alignment:
| Q |
5 |
tgcctgctgctatattccagagattgacatttagttatggagtattttattggcggcatatatacaataagact |
78 |
Q |
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| T |
9879169 |
tgcctgctattatattttagagattgacatttagttgcggagtattttattggtggcatatatacaataagact |
9879242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 33098487 - 33098547
Alignment:
| Q |
31 |
acatttagttatggagtattttattggcggcatatatacaataagactgccaatctaatgc |
91 |
Q |
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| T |
33098487 |
acatttagttacagagtattttattggtggcaaatatacaataagactgccaatctaatgc |
33098547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 4479394 - 4479446
Alignment:
| Q |
25 |
agattgacatttagttatggagtattttattggcggcatatatacaataagact |
78 |
Q |
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| T |
4479394 |
agattgacatttagttacggagtattt-attggtggcatatatacaataagact |
4479446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 4479444 - 4479480
Alignment:
| Q |
109 |
acttcattcactgaatataacgcacaagtctatgtac |
145 |
Q |
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| T |
4479444 |
acttcattcactgaatataatgcacaagtctatgtac |
4479480 |
T |
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