View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21347_low_64 (Length: 250)

Name: NF21347_low_64
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21347_low_64
NF21347_low_64
[»] chr3 (22 HSPs)
chr3 (1-239)||(44664073-44664311)
chr3 (119-190)||(19227376-19227447)
chr3 (121-190)||(45746482-45746551)
chr3 (119-190)||(45113802-45113873)
chr3 (119-190)||(53703739-53703810)
chr3 (119-188)||(46220375-46220444)
chr3 (119-159)||(25313287-25313327)
chr3 (120-188)||(34269308-34269376)
chr3 (114-190)||(53284320-53284396)
chr3 (119-190)||(21944298-21944369)
chr3 (119-190)||(31376243-31376314)
chr3 (119-190)||(39616979-39617050)
chr3 (116-190)||(44118251-44118325)
chr3 (114-195)||(43901585-43901666)
chr3 (151-194)||(8764273-8764316)
chr3 (119-190)||(16123766-16123836)
chr3 (119-190)||(27302147-27302218)
chr3 (120-190)||(48643672-48643742)
chr3 (119-164)||(2544446-2544491)
chr3 (143-187)||(36081783-36081828)
chr3 (145-185)||(2544493-2544533)
chr3 (145-173)||(38217489-38217517)
[»] chr2 (19 HSPs)
chr2 (121-194)||(3365339-3365412)
chr2 (119-190)||(15239760-15239831)
chr2 (119-190)||(28143813-28143884)
chr2 (119-190)||(41464723-41464794)
chr2 (119-189)||(36103462-36103532)
chr2 (119-190)||(45076351-45076422)
chr2 (140-190)||(27306741-27306791)
chr2 (119-190)||(23464564-23464636)
chr2 (121-190)||(31853205-31853275)
chr2 (131-168)||(41119971-41120008)
chr2 (121-185)||(44283605-44283670)
chr2 (118-194)||(6971578-6971654)
chr2 (138-190)||(27311645-27311697)
chr2 (119-159)||(41464813-41464853)
chr2 (119-190)||(25795306-25795377)
chr2 (119-190)||(40534581-40534652)
chr2 (130-169)||(44364191-44364230)
chr2 (128-190)||(11687543-11687605)
chr2 (119-192)||(6971505-6971578)
[»] chr8 (17 HSPs)
chr8 (119-194)||(43932113-43932188)
chr8 (123-194)||(27108053-27108124)
chr8 (120-190)||(29690446-29690516)
chr8 (128-189)||(38298570-38298631)
chr8 (119-190)||(13831943-13832014)
chr8 (119-190)||(34745266-34745337)
chr8 (119-190)||(43292577-43292648)
chr8 (119-190)||(45372714-45372785)
chr8 (146-194)||(35583919-35583967)
chr8 (119-190)||(9633090-9633161)
chr8 (119-190)||(34604790-34604861)
chr8 (128-194)||(38494257-38494323)
chr8 (120-190)||(44579961-44580031)
chr8 (119-189)||(7548566-7548637)
chr8 (119-194)||(24599678-24599753)
chr8 (119-161)||(12025671-12025713)
chr8 (112-164)||(24599763-24599815)
[»] chr7 (28 HSPs)
chr7 (123-194)||(10674136-10674207)
chr7 (119-190)||(45025603-45025674)
chr7 (119-194)||(45123254-45123329)
chr7 (121-190)||(31903018-31903087)
chr7 (119-190)||(24164525-24164596)
chr7 (123-190)||(41395730-41395797)
chr7 (119-190)||(41487800-41487871)
chr7 (114-190)||(29559505-29559581)
chr7 (119-190)||(12806917-12806988)
chr7 (131-190)||(47280241-47280300)
chr7 (120-190)||(33901048-33901118)
chr7 (140-190)||(47484089-47484139)
chr7 (121-190)||(13860285-13860354)
chr7 (121-190)||(22618174-22618243)
chr7 (145-190)||(47612325-47612370)
chr7 (119-190)||(18064731-18064802)
chr7 (119-190)||(40198613-40198684)
chr7 (119-190)||(41088861-41088932)
chr7 (119-195)||(48948951-48949029)
chr7 (119-169)||(24932392-24932442)
chr7 (120-190)||(27320304-27320374)
chr7 (120-190)||(28248441-28248511)
chr7 (119-188)||(37006526-37006596)
chr7 (114-159)||(3633290-3633335)
chr7 (116-169)||(27320383-27320436)
chr7 (145-194)||(29835148-29835197)
chr7 (138-190)||(7999516-7999568)
chr7 (131-167)||(30709194-30709230)
[»] scaffold0023 (1 HSPs)
scaffold0023 (119-194)||(112887-112962)
[»] chr4 (30 HSPs)
chr4 (121-188)||(27587316-27587383)
chr4 (119-190)||(42159982-42160053)
chr4 (140-194)||(35929040-35929094)
chr4 (121-190)||(24100770-24100839)
chr4 (119-190)||(43556759-43556831)
chr4 (119-190)||(36196433-36196504)
chr4 (119-194)||(43141830-43141905)
chr4 (119-190)||(54864073-54864144)
chr4 (120-190)||(52136767-52136837)
chr4 (138-190)||(23558974-23559026)
chr4 (119-190)||(8347560-8347631)
chr4 (119-190)||(33615788-33615859)
chr4 (119-190)||(52966463-52966534)
chr4 (128-190)||(22210807-22210869)
chr4 (128-190)||(31853085-31853147)
chr4 (119-189)||(35877323-35877393)
chr4 (128-190)||(52278035-52278097)
chr4 (119-188)||(4418106-4418175)
chr4 (119-190)||(25874708-25874780)
chr4 (128-188)||(33622950-33623010)
chr4 (144-175)||(6724950-6724981)
chr4 (121-176)||(24100886-24100941)
chr4 (119-190)||(29686468-29686539)
chr4 (119-190)||(32193543-32193614)
chr4 (119-190)||(54673319-54673390)
chr4 (147-188)||(50511497-50511538)
chr4 (138-190)||(1140893-1140945)
chr4 (158-190)||(1205130-1205162)
chr4 (119-159)||(4418196-4418236)
chr4 (143-175)||(6171095-6171127)
[»] chr1 (12 HSPs)
chr1 (119-190)||(51590439-51590510)
chr1 (107-190)||(48565524-48565607)
chr1 (120-176)||(25238655-25238711)
chr1 (118-189)||(44224278-44224348)
chr1 (145-190)||(12175519-12175564)
chr1 (140-189)||(13320372-13320421)
chr1 (121-190)||(52279302-52279371)
chr1 (119-190)||(15699473-15699544)
chr1 (140-190)||(29438168-29438218)
chr1 (144-194)||(43851013-43851063)
chr1 (138-190)||(2543339-2543391)
chr1 (109-169)||(34146893-34146953)
[»] chr6 (11 HSPs)
chr6 (121-194)||(12240113-12240184)
chr6 (119-190)||(8264981-8265052)
chr6 (119-190)||(10145283-10145354)
chr6 (120-194)||(359609-359683)
chr6 (128-190)||(9343138-9343200)
chr6 (119-190)||(12217559-12217631)
chr6 (128-190)||(3847476-3847538)
chr6 (146-190)||(12605678-12605722)
chr6 (130-169)||(22053806-22053845)
chr6 (121-190)||(30438754-30438823)
chr6 (129-190)||(33127854-33127915)
[»] chr5 (23 HSPs)
chr5 (120-190)||(38978752-38978822)
chr5 (119-188)||(9630305-9630374)
chr5 (113-194)||(24173484-24173565)
chr5 (119-188)||(29451902-29451971)
chr5 (138-194)||(27600786-27600842)
chr5 (119-190)||(20502096-20502167)
chr5 (119-190)||(29874385-29874456)
chr5 (128-190)||(13128211-13128273)
chr5 (120-178)||(29002822-29002880)
chr5 (119-184)||(73858-73923)
chr5 (145-189)||(35204958-35205002)
chr5 (145-189)||(35212157-35212201)
chr5 (119-187)||(35318585-35318653)
chr5 (119-190)||(33247360-33247430)
chr5 (146-188)||(5355587-5355629)
chr5 (128-194)||(13278904-13278970)
chr5 (128-170)||(32020415-32020457)
chr5 (144-173)||(6761068-6761097)
chr5 (128-173)||(8235462-8235507)
chr5 (119-188)||(33970727-33970796)
chr5 (119-159)||(7537120-7537160)
chr5 (116-156)||(13932563-13932603)
chr5 (146-190)||(32455207-32455251)
[»] scaffold0200 (1 HSPs)
scaffold0200 (119-190)||(25682-25754)
[»] scaffold0110 (1 HSPs)
scaffold0110 (119-190)||(40259-40330)
[»] scaffold0059 (1 HSPs)
scaffold0059 (119-190)||(26654-26725)
[»] scaffold0027 (1 HSPs)
scaffold0027 (123-190)||(5482-5549)
[»] scaffold0287 (1 HSPs)
scaffold0287 (114-159)||(12750-12795)
[»] scaffold0474 (1 HSPs)
scaffold0474 (128-188)||(11768-11828)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44664073 - 44664311
Alignment:
Q  1 ttaaagatgatcattgtaaaatattctttagctttagaccattggcttggtttgaattgaatctctcatctaaaaatattgttaatactatttggtcata 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44664073 ttaaagatgatcattgtaaaatcttctttagctttagaccattggcttgttttgaattgaatctctcatctaaaaatattgttaatactatttgctcata 44664172  T
Q  101 gaagttactatttcttctggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattaggagtta 200  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44664173 gaagttactatttcttctagtccttgatataaaaaataattgattttttaggttcattgaataattaatgtatcttattataaatatagattaggagtta 44664272  T
Q  201 agatcttatccatttataataaggattgaagtgagtatt 239  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  44664273 agatcttatccatttataataaggactgaagtgagtatt 44664311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 19227447 - 19227376
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||||||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  19227447 ggtccttattataagaaacaattgatttttttggttcatagaataattaatttatcttgttataaatataga 19227376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 45746482 - 45746551
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| ||||| ||| |||||||||||||| || ||||||||||||||||||||  |||||||||||||    
T  45746482 tccttagtataagaaacaattgattttttagatttattgaataattaatatatctcgttataaatataga 45746551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 45113873 - 45113802
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  45113873 ggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatataga 45113802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 53703739 - 53703810
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||| ||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  53703739 ggtccttattataagaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatataga 53703810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 46220375 - 46220444
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    |||||||| ||||| ||| |||||||||||||  ||||| ||||||||||| ||||||||| ||||||||    
T  46220375 ggtccttattataagaaaaaattgattttttatattcatagaataattaatgtatcttattgtaaatata 46220444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 25313287 - 25313327
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattg 159  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  25313287 ggtccttattataaaaaataattgattttttaggttcattg 25313327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 34269376 - 34269308
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    ||||||| ||||||||| | |||| ||||||| ||||||||||||||||||||| |  |||||||||||    
T  34269376 gtccttattataaaaaacatttgactttttagattcattgaataattaatatatttcgttataaatata 34269308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 53284320 - 53284396
Alignment:
Q  114 cttctggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||||||||| ||||| ||| | |||||||||||| |||||  |||||||||| ||||||||| ||||| ||||    
T  53284320 cttctggtccttattataagaaaaagttgattttttagtttcataaaataattaatgtatcttattgtaaatgtaga 53284396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 21944298 - 21944369
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||| ||||||||||||| ||||||||||| ||||||| | || |||||||    
T  21944298 ggtccttattataagaaaaaattgactttttaggttcatagaataattaatgtatcttagtgtagatataga 21944369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 31376314 - 31376243
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| || || ||| |||||| ||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  31376314 ggtccttattacaagaaacaattgacttttttggttcatagaataattaatgtatcttcttataaatataga 31376243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 39617050 - 39616979
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| || || ||| |||||| ||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  39617050 ggtccttattacaagaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatataga 39616979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 44118325 - 44118251
Alignment:
Q  116 tctggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||||||| ||||| ||| |||||| ||||||| ||||||  ||||||||| ||| || |||||||||||||    
T  44118325 tctggtccttattataagaaacaattgactttttagattcattatataattaatgtatattgttataaatataga 44118251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 43901585 - 43901666
Alignment:
Q  114 cttctggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattagg 195  Q
    |||||| |||||| ||||  ||| | |||| ||||||||||||| ||||||||||| |||||||||  ||||||||| ||||    
T  43901585 cttctgatccttattatatgaaaaagttgactttttaggttcatagaataattaatgtatcttattgaaaatatagactagg 43901666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 8764273 - 8764316
Alignment:
Q  151 ggttcattgaataattaatatatcttattataaatatagattag 194  Q
    ||||||| ||||||||||| |||||| |||||||||||||||||    
T  8764273 ggttcatagaataattaatgtatcttgttataaatatagattag 8764316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 16123766 - 16123836
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||| |||| ||||| ||  |||||||||||||||||||| ||||||||||    
T  16123766 ggtccttattataagaaaaaattgactttt-aggtttataaaataattaatatatcttattgtaaatataga 16123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 27302218 - 27302147
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||| ||||| ||| | |||| ||||||||||||| ||||||||||| ||||| ||| ||||||||||    
T  27302218 ggtctttattataagaaaaagttgactttttaggttcatagaataattaatgtatctaattgtaaatataga 27302147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 48643742 - 48643672
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||| || || ||| |||||| ||||||| ||||||||||||||||| ||| |  |||||||||||||    
T  48643742 gtccttattacaagaaacaattgactttttagattcattgaataattaatgtatttcgttataaatataga 48643672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 2544446 - 2544491
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataa 164  Q
    |||||||| ||||| ||| |||||| ||||||||||||||||||||    
T  2544446 ggtccttattataagaaacaattgactttttaggttcattgaataa 2544491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 36081828 - 36081783
Alignment:
Q  143 attttttaggttcattgaataattaatatatcttat-tataaatat 187  Q
    |||||||||||||||||||||||| || |||||||| |||||||||    
T  36081828 attttttaggttcattgaataattcatgtatcttatctataaatat 36081783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 2544493 - 2544533
Alignment:
Q  145 tttttaggttcattgaataattaatatatcttattataaat 185  Q
    |||||||||||||||||||||| || |||||| ||||||||    
T  2544493 tttttaggttcattgaataattgatgtatcttgttataaat 2544533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 38217489 - 38217517
Alignment:
Q  145 tttttaggttcattgaataattaatatat 173  Q
    |||||||||||||||||||||||||||||    
T  38217489 tttttaggttcattgaataattaatatat 38217517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 3365412 - 3365339
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||||| ||||| |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  3365412 tccttattataagaaataattgatttttttgattcattgaataattaatatatcttgttataaatatagattag 3365339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 15239831 - 15239760
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  15239831 ggtccttattataagaaaaagttgactttttaggttcatagaataattaatatatcttattgtaaatataga 15239760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 28143884 - 28143813
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28143884 ggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattataaatataga 28143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 41464723 - 41464794
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||| ||||||||| ||||||||||||| |||||||||||||||||| |||||  |||||||||||||    
T  41464723 ggtctttattataaaaaacaattgattttttaagttcattgaataattaatgtatctcgttataaatataga 41464794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 36103532 - 36103462
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatag 189  Q
    |||||||| ||||| ||| | |||||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  36103532 ggtccttattataagaaaaagttgattttttaggttcatagaataattaatgtatcttattgtaaatatag 36103462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 45076351 - 45076422
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||||||||||||||||| ||||||||||| ||| ||||| || |||||||    
T  45076351 ggtccttattataagaaaaaattgattttttaggttcatagaataattaatgtattttattgtacatataga 45076422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 27306741 - 27306791
Alignment:
Q  140 ttgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  27306741 ttgactttttaggttcattgaataattaatgtatcttattgtaaatataga 27306791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 23464636 - 23464564
Alignment:
Q  119 ggtccttaatataaaaaataattgatt-ttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  23464636 ggtccttattataagaaaaagttgattattttaggttcatagaataattaatgtatcttattgtaaatataga 23464564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 31853275 - 31853205
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttc-attgaataattaatatatcttattataaatataga 190  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||||||| |||    |||||||||||||    
T  31853275 tccttattataaaaaataattgattttttagattcaattgaataattaatgtattccgttataaatataga 31853205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 41119971 - 41120008
Alignment:
Q  131 aaaaaataattgattttttaggttcattgaataattaa 168  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  41119971 aaaaaataattgattttttagattcattgaataattaa 41120008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 44283670 - 44283605
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataatt-aatatatcttattataaat 185  Q
    |||||| ||||| |||||||||| ||||||| |||||||||||||| ||| |||||| ||||||||    
T  44283670 tccttattataagaaataattgactttttagattcattgaataattaaatgtatcttgttataaat 44283605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 6971578 - 6971654
Alignment:
Q  118 tggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    ||||||||| ||||| ||| |||||| ||||||  || |||| ||||||||| ||| || |||||||||||||||||    
T  6971578 tggtccttattataagaaacaattgactttttaaatttattgtataattaatgtatattgttataaatatagattag 6971654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 27311697 - 27311645
Alignment:
Q  138 aattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||||||||| || |||||||||||||  |||||| |||||||||||||    
T  27311697 aattgattttttagatttattgaataattaacgtatcttgttataaatataga 27311645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 41464853 - 41464813
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattg 159  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  41464853 ggtccttgctataaaaaataattgattttttaggttcattg 41464813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 25795377 - 25795306
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| || || ||| |||||| ||||||| ||||||||||||||||| ||| |  |||||||||||||    
T  25795377 ggtccttattacaagaaacaattgactttttagattcattgaataattaatgtatttcgttataaatataga 25795306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 40534652 - 40534581
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| | | | |||| ||||||||||||| |||||| |||| ||||||||| ||||||||||    
T  40534652 ggtccttattataagataaagttgactttttaggttcatagaataaataatgtatcttattgtaaatataga 40534581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 44364230 - 44364191
Alignment:
Q  130 taaaaaataattgattttttaggttcattgaataattaat 169  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  44364230 taaaaaataattgattttttagatttattgaataattaat 44364191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 11687605 - 11687543
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||| ||| |||||| ||||||| || ||||||||||||||||| ||  |||||||||||||    
T  11687605 tataagaaacaattgactttttagatttattgaataattaatataactcgttataaatataga 11687543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 6971505 - 6971578
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagatt 192  Q
    |||||||| ||||| ||| |||||| ||||||  || |||| ||||||||| ||| || |||||||||||||||    
T  6971505 ggtccttattataagaaacaattgactttttaaatttattgtataattaatgtatattgttataaatatagatt 6971578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 43932188 - 43932113
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||||||| ||||| ||| |||||| ||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  43932188 ggtccttattataagaaacaattgactttttagattcattgaataattaatgtatcttgttataaatatagattag 43932113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 27108124 - 27108053
Alignment:
Q  123 cttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||| ||||||  ||||||||| |||||||    
T  27108124 cttattataaaaaataactgattttttagattcattgaataattaacatatctcgttataaatacagattag 27108053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 29690446 - 29690516
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||| ||||| ||| || ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  29690446 gtccttattataagaaaaaactgactttttaggttcatagaataattaatgtatcttattataaatataga 29690516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 38298631 - 38298570
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatag 189  Q
    ||||| ||| |||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  38298631 tataagaaacaattgattttttaggttcattgaataattaatgtatctcgttataaatatag 38298570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 13832014 - 13831943
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  13832014 ggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatataga 13831943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 34745266 - 34745337
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||| ||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  34745266 ggtccttattataagaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatataga 34745337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 43292577 - 43292648
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||| ||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  43292577 ggtccttattataagaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatataga 43292648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 45372714 - 45372785
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||||||||| ||| | |||| ||||||||||||| ||||||||||| |||||||||  |||||||||    
T  45372714 ggtccttaatataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgaaaatataga 45372785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 35583919 - 35583967
Alignment:
Q  146 ttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  35583919 ttttaggttcatagaataattaatgtatcttattgtaaatatagattag 35583967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 9633090 - 9633161
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| ||||||  |||||| ||||||| ||||||||| |||||| |||||||||||||    
T  9633090 ggtccttattataagaaacaattgacgttttagattcattgtataattaatgtatcttgttataaatataga 9633161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 34604790 - 34604861
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||||||||| |||||| |||| ||||||||| ||||||||||    
T  34604790 ggtccttattataagaaaaagttgactttttaggttcatagaataaataatgtatcttattgtaaatataga 34604861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 38494257 - 38494323
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    ||||| |||||||||| |||||  |||||| ||||||||||| |||||| ||||||||||| |||||    
T  38494257 tataagaaataattgactttttttgttcatagaataattaatgtatcttgttataaatataaattag 38494323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 44580031 - 44579961
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||| ||||| ||| | |||| |||||| |||||| ||||||||||| ||||||||| ||||||||||    
T  44580031 gtccttattataagaaaaagttgactttttaagttcatagaataattaatgtatcttattgtaaatataga 44579961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 7548637 - 7548566
Alignment:
Q  119 ggtccttaatataaaaaataattgatttttt-aggttcattgaataattaatatatcttattataaatatag 189  Q
    |||||||| ||||| ||| | |||||||||| |||||||| |||||||||||  |||||||| |||||||||    
T  7548637 ggtccttattataagaaaaagttgatttttttaggttcatagaataattaatgcatcttattgtaaatatag 7548566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 24599678 - 24599753
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||| ||| ||||| |||||||||| ||||||  |||||||||||| |||| ||| | ||||||||||||| ||||    
T  24599678 ggtctttattataagaaataattgactttttaaattcattgaataaataatgtatttcattataaatataggttag 24599753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 12025713 - 12025671
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaa 161  Q
    |||||||| |||||||||||||| |||||||| ||||||||||    
T  12025713 ggtccttattataaaaaataattaattttttaagttcattgaa 12025671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 24599815 - 24599763
Alignment:
Q  112 ttcttctggtccttaatataaaaaataattgattttttaggttcattgaataa 164  Q
    |||||||||||||||  |||| ||| |||||||||||||| ||||||| ||||    
T  24599815 ttcttctggtccttataataagaaacaattgattttttagattcattgtataa 24599763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 10674136 - 10674207
Alignment:
Q  123 cttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||| ||||||||| | |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  10674136 cttattataaaaaacatttgactttttaggttcattgaataattaatgtatcttgttataaatatagattag 10674207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 45025603 - 45025674
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||||||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  45025603 ggtccttattataagaaacaattgatttttttggttcatagaataattaatgtatcttgttataaatataga 45025674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 45123254 - 45123329
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||||||| ||||||||| | |||| ||||||  ||||| ||||||||||| ||||||||||||||||||||||||    
T  45123254 ggtccttactataaaaaaaagttgactttttaaattcatagaataattaatgtatcttattataaatatagattag 45123329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 31903087 - 31903018
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||| ||| |  | |||||||||||    
T  31903087 tccttattataaaaaataattaattttttaggttcattgaataattaatgtatttcgtcataaatataga 31903018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 24164525 - 24164596
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||||||||| ||||||| ||||||||||| |||||| ||| |||||||||    
T  24164525 ggtccttattataagaaacaattgatttttttggttcatagaataattaatgtatcttgttagaaatataga 24164596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 41395797 - 41395730
Alignment:
Q  123 cttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||||| ||| | |||| ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  41395797 cttattataagaaaaagttgactttttagattcatagaataattaatatatcttattataaatataga 41395730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 41487800 - 41487871
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  41487800 ggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatataga 41487871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 29559581 - 29559505
Alignment:
Q  114 cttctggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||||||||| || || ||| |||||| ||||||| ||||||||||||||||| ||| |  |||||||||||||    
T  29559581 cttctggtccttattacaagaaacaattgactttttagattcattgaataattaatgtatttcgttataaatataga 29559505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 12806917 - 12806988
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| |||||||||||||  |||||||||| ||||||||| ||||||||||    
T  12806917 ggtccttattataagaaaaagttgactttttaggttcataaaataattaatgtatcttattgtaaatataga 12806988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 47280300 - 47280241
Alignment:
Q  131 aaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| | |||| ||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  47280300 aaaaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatataga 47280241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 33901048 - 33901118
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||| ||||| ||| |||||||||||| | ||||| ||||| ||||| |||||| |||||||||||||    
T  33901048 gtccttattataagaaacaattgatttttttgattcatagaatagttaatgtatcttgttataaatataga 33901118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 47484139 - 47484089
Alignment:
Q  140 ttgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  47484139 ttgactttttaggttcatagaataattaatgtatcttattgtaaatataga 47484089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 13860354 - 13860285
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| ||||| ||| |||||| ||||||| ||||||| ||||||||| ||| || |||||||||||||    
T  13860354 tccttattataagaaacaattgactttttagattcattgtataattaatgtatattgttataaatataga 13860285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 22618174 - 22618243
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| ||||| ||||  |||||||||||| |||||||| |||||||| |||||| || ||||||||||    
T  22618174 tccttattataagaaatttttgattttttagattcattgagtaattaatgtatcttgttgtaaatataga 22618243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 47612325 - 47612370
Alignment:
Q  145 tttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||||||||||||||||||||| |||||  |||||||||||||    
T  47612325 tttttaggttcattgaataattaatgtatctcgttataaatataga 47612370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 18064731 - 18064802
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||||||||| ||| | || | |||||| |||||| ||||||||||| |||||||||  |||||||||    
T  18064731 ggtccttaatataagaaaaagttaactttttaagttcatagaataattaatgtatcttattgaaaatataga 18064802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 40198613 - 40198684
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||||||||| |||||||||||  ||||| || ||||||||||    
T  40198613 ggtccttattataagaaaaagttgactttttaggttcatagaataattaatgcatcttgttgtaaatataga 40198684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 41088861 - 41088932
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| || || ||| |||||| ||||||| ||||||||||||||||| ||| |  |||||||||||||    
T  41088861 ggtccttattacaagaaacaattgactttttagattcattgaataattaatgtatttcgttataaatataga 41088932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 48948951 - 48949029
Alignment:
Q  119 ggtccttaatataaaaaataattgatt--ttttaggttcattgaataattaatatatcttattataaatatagattagg 195  Q
    |||||||| ||||| |||||||| | |  |||| ||||||| ||||||||||| |||||| ||||||||||||| ||||    
T  48948951 ggtccttattataagaaataattaactcttttttggttcatagaataattaatgtatcttgttataaatatagactagg 48949029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 24932392 - 24932442
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaat 169  Q
    |||||||| ||||| ||| |||||| ||||||||||||| |||||||||||    
T  24932392 ggtccttattataagaaaaaattgactttttaggttcatagaataattaat 24932442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 27320304 - 27320374
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||| ||||| ||| | |||| |||||| ||||||  ||||||| |||||||||||| ||||||||||    
T  27320304 gtccttattataagaaaaagttgactttttaagttcataaaataattgatatatcttattgtaaatataga 27320374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 28248441 - 28248511
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||| ||||| ||| ||||||  |||||| |||||||||||||||||  ||||  |||||||||||||    
T  28248441 gtccttattataagaaacaattgacattttagattcattgaataattaatgcatctcgttataaatataga 28248511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 37006596 - 37006526
Alignment:
Q  119 ggtccttaatataa-aaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    |||||||| ||||| |||| |||||| |||||| |||||| ||||||||||| |||| |||| ||||||||    
T  37006596 ggtccttattataagaaaaaaattgactttttaagttcatagaataattaatgtatcatattgtaaatata 37006526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 3633335 - 3633290
Alignment:
Q  114 cttctggtccttaatataaaaaataattgattttttaggttcattg 159  Q
    ||||||||||||| ||||| ||||| |||| |||||||||||||||    
T  3633335 cttctggtccttattataagaaatatttgactttttaggttcattg 3633290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 27320436 - 27320383
Alignment:
Q  116 tctggtccttaatataaaaaataattgattttttaggttcattgaataattaat 169  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||||| |||| ||||    
T  27320436 tctggtccttattataagaaacaattgatttttttggttcattgtataagtaat 27320383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 29835197 - 29835148
Alignment:
Q  145 tttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    ||||||| |||||||||||||||||||||||  || |||||||| |||||    
T  29835197 tttttagattcattgaataattaatatatctcgttgtaaatataaattag 29835148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 7999568 - 7999516
Alignment:
Q  138 aattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| |||||||||||||| ||||||||||  ||||  |||||||||||||    
T  7999568 aattgactttttaggttcattaaataattaatgcatctcgttataaatataga 7999516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 30709194 - 30709230
Alignment:
Q  131 aaaaaataattgattttttaggttcattgaataatta 167  Q
    |||||| |||||||||||||| |||||||||||||||    
T  30709194 aaaaaaaaattgattttttagattcattgaataatta 30709230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 112962 - 112887
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    ||||||||| |||| ||| |||||| ||||||| || |||||||||||||| |||||| |||||||||||||||||    
T  112962 ggtccttaacataagaaacaattgactttttagatttattgaataattaatgtatcttgttataaatatagattag 112887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 27587383 - 27587316
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    |||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||  |||||||||||    
T  27587383 tccttattataagaaataatttattttttaggttcattgaataattaatgtatctcgttataaatata 27587316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 42159982 - 42160053
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||||||||||||||||  |||||| ||||||||||| |||||| |||||||||||||    
T  42159982 ggtccttattataagaaataattgattttttttgttcatagaataattaatgtatcttgttataaatataga 42160053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 35929040 - 35929094
Alignment:
Q  140 ttgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  35929040 ttgattttttaggtttatagaataattaatgtatcttattataaatatagattag 35929094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 24100770 - 24100839
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| ||||| |||||||| | ||||||| ||||||||||||||||| |||||| |||||||||||||    
T  24100770 tccttattataagaaataattaactttttagattcattgaataattaatgtatcttgttataaatataga 24100839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 43556831 - 43556759
Alignment:
Q  119 ggtccttaatataa-aaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| |||| |||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||    
T  43556831 ggtccttattataagaaaaaaattgattttttaggttcatagaataattaatgtatcttattgtaaatgtaga 43556759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 36196504 - 36196433
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||||||||||| ||||| ||||||||||| ||||||||| ||||| ||||    
T  36196504 ggtccttattataagaaaaaattgattttttagattcatagaataattaatgtatcttattgtaaatgtaga 36196433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 43141905 - 43141830
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||| ||| ||||| ||| | |||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  43141905 ggtctttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatatagattag 43141830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 54864073 - 54864144
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  54864073 ggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatataga 54864144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 52136837 - 52136767
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||| ||||| ||| ||||||||||||  |||||| ||||||||||| |||||| |||||||||||||    
T  52136837 gtccttattataagaaacaattgatttttttagttcatagaataattaatgtatcttgttataaatataga 52136767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 23559026 - 23558974
Alignment:
Q  138 aattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||||||||||| |||||| |||||||||||||||  |||||||||||||    
T  23559026 aattgattttttaggctcattggataattaatatatctcgttataaatataga 23558974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 8347631 - 8347560
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||||||||| |||||| |||| ||||||||| ||||||||||    
T  8347631 ggtccttattataagaaaaagttgactttttaggttcatagaataaataatgtatcttattgtaaatataga 8347560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 33615788 - 33615859
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| |||   |||||||||||| |||||||| |||||||| ||||||||| ||||||||||    
T  33615788 ggtccttattataagaaacttttgattttttagattcattgagtaattaatgtatcttattgtaaatataga 33615859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 52966534 - 52966463
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||||| ||||| ||||||| |||||||||||  ||||| |||||||||||||    
T  52966534 ggtccttattataagaaacaattgacttttttggttcatagaataattaatgcatcttgttataaatataga 52966463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 22210807 - 22210869
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||| ||| |||||| ||||||  |||||||||||||||||||||||| || ||||||||||    
T  22210807 tataagaaacaattgactttttaaattcattgaataattaatatatcttgttgtaaatataga 22210869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 31853085 - 31853147
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||| ||||||||||||||||   ||||| ||||||||||| |||||| |||||||||||||    
T  31853085 tataagaaataattgatttttttaattcatagaataattaatgtatcttgttataaatataga 31853147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 35877323 - 35877393
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatag 189  Q
    |||||||| ||||| ||| | |||| ||||||| ||||| ||||||||||| ||||||||| |||||||||    
T  35877323 ggtccttattataagaaaaagttgactttttagattcatagaataattaatgtatcttattgtaaatatag 35877393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 52278097 - 52278035
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||| ||| |||||| ||||||| || || ||||||||||||||||||||| ||||||||||    
T  52278097 tataagaaaaaattgactttttagatttatagaataattaatatatcttattgtaaatataga 52278035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 4418106 - 4418175
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    |||||||| ||||| ||| ||||||||||||  |||||| ||||||||||| ||| || |||||||||||    
T  4418106 ggtccttattataagaaacaattgatttttttagttcatagaataattaatgtattttgttataaatata 4418175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 25874708 - 25874780
Alignment:
Q  119 ggtccttaatataaaaaataatt-gattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||||||| || | |||||||||| ||||| ||||||||||| ||| ||||| ||||||||||    
T  25874708 ggtccttattataaaaaaaaaatagattttttagattcatagaataattaatgtattttattgtaaatataga 25874780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 33623010 - 33622950
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    ||||| ||| |||||| |||||| |||||| ||||||||||| ||||||||| ||||||||    
T  33623010 tataagaaaaaattgactttttacgttcatagaataattaatgtatcttattgtaaatata 33622950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 175
Target Start/End: Complemental strand, 6724981 - 6724950
Alignment:
Q  144 ttttttaggttcattgaataattaatatatct 175  Q
    ||||||||||||||||||||||||||||||||    
T  6724981 ttttttaggttcattgaataattaatatatct 6724950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 24100941 - 24100886
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatctt 176  Q
    |||||| ||||| |||||||| | ||||||| ||||||||||||||||| ||||||    
T  24100941 tccttattataagaaataattaactttttagattcattgaataattaatgtatctt 24100886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 29686539 - 29686468
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| |||| ||||||||  ||||||| ||||||||| ||| || |||||||||||||    
T  29686539 ggtccttattataagaaacaattaattttttaaattcattgtataattaatgtatattgttataaatataga 29686468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 32193614 - 32193543
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| |||   ||||||||||| |||||| ||||||||||| || ||||||| |||||||||    
T  32193614 ggtccttattataagaaaacgttgattttttaagttcatagaataattaatgtaccttattagaaatataga 32193543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 54673319 - 54673390
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| |||||||||||||||||||| ||||  ||||  |||||||||||||    
T  54673319 ggtccttattataagaaacatttgactttttaggttcattgaataagtaatgcatctcgttataaatataga 54673390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 50511538 - 50511497
Alignment:
Q  147 tttaggttcattgaataattaatatatcttattataaatata 188  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  50511538 tttaggttcatagaataattaatgtatcttattgtaaatata 50511497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 1140893 - 1140945
Alignment:
Q  138 aattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| ||||||| |||||||||||||| || ||| || |||||||||||||    
T  1140893 aattgaatttttagattcattgaataattgatgtattttgttataaatataga 1140945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 1205130 - 1205162
Alignment:
Q  158 tgaataattaatatatcttattataaatataga 190  Q
    |||||||||||| ||||||||||||||||||||    
T  1205130 tgaataattaatgtatcttattataaatataga 1205162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 4418236 - 4418196
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattg 159  Q
    |||||||| ||||| ||| ||||||||||||||||||||||    
T  4418236 ggtccttattataagaaaaaattgattttttaggttcattg 4418196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 6171127 - 6171095
Alignment:
Q  143 attttttaggttcattgaataattaatatatct 175  Q
    ||||||||| |||||||||||||||||||||||    
T  6171127 attttttagtttcattgaataattaatatatct 6171095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 51590439 - 51590510
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||||||| |||||| ||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  51590439 ggtccttattataaaaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatataga 51590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 48565524 - 48565607
Alignment:
Q  107 actatttcttctggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||| ||| ||| ||| ||||| |||||||||||||||| ||||||| ||||||||||  |||||| |||||||||||||    
T  48565524 actacttcctctagtctttattataagaaataattgatttttttggttcatagaataattaaagtatcttgttataaatataga 48565607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 25238711 - 25238655
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatctt 176  Q
    ||||||| ||||||||| |||||| ||||||||||||| ||||||||||| ||||||    
T  25238711 gtccttattataaaaaacaattgactttttaggttcatagaataattaatgtatctt 25238655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 44224278 - 44224348
Alignment:
Q  118 tggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatag 189  Q
    |||| |||| ||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||| |||||||||    
T  44224278 tggttcttattataaaaaa-aattgactttttagattcatagaataattaatgtatcttattgtaaatatag 44224348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 12175564 - 12175519
Alignment:
Q  145 tttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||    
T  12175564 tttttaggttcattgaacaattaatgtatcttgttataaatataga 12175519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 13320421 - 13320372
Alignment:
Q  140 ttgattttttaggttcattgaataattaatatatcttattataaatatag 189  Q
    |||| ||||||| ||||| ||||||||||||||||||||| |||||||||    
T  13320421 ttgactttttagattcatagaataattaatatatcttattgtaaatatag 13320372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 52279371 - 52279302
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| ||||| ||| | |||| ||||||| |||||  |||||||||||||||||||| ||||||||||    
T  52279371 tccttattataagaaaaagttgactttttagattcatataataattaatatatcttattgtaaatataga 52279302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 15699473 - 15699544
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| |||   |||||||||||| |||||||| |||||||| |||||| || ||||||||||    
T  15699473 ggtccttattataagaaacttttgattttttagattcattgagtaattaatgtatcttgttgtaaatataga 15699544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 29438168 - 29438218
Alignment:
Q  140 ttgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||||||||||||| ||||||||||| |||||||||  |||||||||    
T  29438168 ttgactttttaggttcatagaataattaatgtatcttattgaaaatataga 29438218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 43851063 - 43851013
Alignment:
Q  144 ttttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||| ||| |||||| ||||||||||||||||| ||||||||||| |||||    
T  43851063 ttttatagattcattaaataattaatatatcttgttataaatatatattag 43851013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 2543339 - 2543391
Alignment:
Q  138 aattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| |||| | |||||||||||||||||| |||||  |||||||||||||    
T  2543339 aattgacttttcaagttcattgaataattaatttatctcgttataaatataga 2543391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 34146953 - 34146893
Alignment:
Q  109 tatttcttctggtccttaatataaaaaataattgattttttaggttcattgaataattaat 169  Q
    ||||||||||| ||||   ||||| ||| |||||||||||| | |||||||||||||||||    
T  34146953 tatttcttctgatcctatttataagaaaaaattgatttttttgattcattgaataattaat 34146893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 12240113 - 12240184
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||  | |||| |||||||||||| |||||    
T  12240113 tccttattataaaaaataattgattttttaggttaattgaataatta--acatctcattataaatataaattag 12240184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 8264981 - 8265052
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||| ||||||||| ||||||||||||  |||||| ||||||||||| |||||| |||||||||||||    
T  8264981 ggtctttattataaaaaacaattgatttttttagttcatagaataattaatgtatcttgttataaatataga 8265052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 10145354 - 10145283
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||| ||||||||| |||||| |||||||||||||  |||||||||| ||||||||| ||||||||||    
T  10145354 ggtctttattataaaaaaaaattgactttttaggttcataaaataattaatgtatcttattgtaaatataga 10145283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 359683 - 359609
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    ||||||| ||||| ||| |||||| |||||||||||| ||||||| |||| |||||  |||||||||||||||||    
T  359683 gtccttattataagaaacaattgactttttaggttcaatgaataactaatgtatctcgttataaatatagattag 359609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 9343138 - 9343200
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||| |||||||||| ||||||| ||||| ||||||||||| |||||| |||||||||||||    
T  9343138 tataagaaataattgactttttagattcatagaataattaatgtatcttgttataaatataga 9343200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 12217631 - 12217559
Alignment:
Q  119 ggtccttaatataa-aaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| |||| |||||| ||||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  12217631 ggtccttattataagaaaaaaattgactttttagattcatagaataattaatgtatcttattgtaaatataga 12217559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 3847538 - 3847476
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||| ||| || ||| |||||||||||||  |||||||||||||| ||||||||||||||||    
T  3847538 tataagaaaaaagtgactttttaggttcatataataattaatatattttattataaatataga 3847476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 12605722 - 12605678
Alignment:
Q  146 ttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  12605722 ttttaggttcatggaataattaatgtatcttattgtaaatataga 12605678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 22053845 - 22053806
Alignment:
Q  130 taaaaaataattgattttttaggttcattgaataattaat 169  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  22053845 taaaaaataattgattttttagatttattgaataattaat 22053806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 30438754 - 30438823
Alignment:
Q  121 tccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||| ||||| ||| | |||| ||||||| ||||| ||||||||||| ||| ||||| ||||||||||    
T  30438754 tccttattataagaaaaagttgactttttagattcatagaataattaatgtattttattgtaaatataga 30438823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 33127915 - 33127854
Alignment:
Q  129 ataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||| |||||| ||||||| || |||||||||||||| |||||| ||| |||||||||    
T  33127915 ataagaaacaattgactttttagatttattgaataattaatgtatcttgttacaaatataga 33127854  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 38978752 - 38978822
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||||| ||||| ||| | |||| ||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  38978752 gtccttattataagaaaaagttgactttttagattcatagaataattaatatatcttattgtaaatataga 38978822  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 9630374 - 9630305
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    |||| ||| ||||| ||| |||||||||||||| ||||| ||||||||||| ||||||||| ||||||||    
T  9630374 ggtctttattataacaaaaaattgattttttagattcatagaataattaatgtatcttattgtaaatata 9630305  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 24173565 - 24173484
Alignment:
Q  113 tcttctggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||||||||||||| ||||| ||| | |||| |||||| ||| || ||||||||||| |||||||||  |||||||||||||    
T  24173565 tcttctggtccttattataagaaaaagttgactttttaagtttatagaataattaatgtatcttattgaaaatatagattag 24173484  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 29451902 - 29451971
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    |||||||| ||||| ||| | |||||||||||| ||||| ||||||||||| ||||||||| ||||||||    
T  29451902 ggtccttattataagaaaaagttgattttttagattcatagaataattaatgtatcttattgtaaatata 29451971  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 27600786 - 27600842
Alignment:
Q  138 aattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    |||||| |||||| |||||| ||||||||||| ||||||||| ||||||||||||||    
T  27600786 aattgactttttaagttcatagaataattaatgtatcttattgtaaatatagattag 27600842  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 20502096 - 20502167
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  20502096 ggtccttattataagaaaaagttgactttttagattcatagaataattaatgtatcttattgtaaatataga 20502167  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 29874456 - 29874385
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||||||||| ||| | || | ||||||||||||| ||||||||||| ||| |||||| |||||||||    
T  29874456 ggtccttaatataagaaaaagttaactttttaggttcatagaataattaatgtattttattaaaaatataga 29874385  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 13128211 - 13128273
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||| |||||||| | |||||| ||| ||||||||||||||||||||  |||||||||||||    
T  13128211 tataagaaataattaactttttatgtttattgaataattaatatatctcgttataaatataga 13128273  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 29002880 - 29002822
Alignment:
Q  120 gtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttat 178  Q
    ||||||| ||||| ||| | ||||||||||||||| || ||||||||||||||||||||    
T  29002880 gtccttattataagaaaaagttgattttttaggtttatggaataattaatatatcttat 29002822  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 73923 - 73858
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaa 184  Q
    |||| ||| ||||| ||| |||||| |||| ||||||||||||||||||||||||||  |||||||    
T  73923 ggtctttattataagaaacaattgacttttcaggttcattgaataattaatatatctcgttataaa 73858  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 35204958 - 35205002
Alignment:
Q  145 tttttaggttcattgaataattaatatatcttattataaatatag 189  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||    
T  35204958 tttttaggttcatagaataattaatgtatcttattgtaaatatag 35205002  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 35212201 - 35212157
Alignment:
Q  145 tttttaggttcattgaataattaatatatcttattataaatatag 189  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||    
T  35212201 tttttaggttcatagaataattaatgtatcttattgtaaatatag 35212157  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 35318653 - 35318585
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatat 187  Q
    |||||||| || || ||| ||||||||||||| ||| |||||||||||||| |||||  ||||||||||    
T  35318653 ggtccttattacaagaaacaattgattttttaagtttattgaataattaatgtatctcgttataaatat 35318585  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 33247430 - 33247360
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||  ||||| ||| | |||| |||||||||||||  |||||||||||||||||||| ||||||||||    
T  33247430 ggtccttgttataagaaaaagttgactttttaggttcata-aataattaatatatcttattgtaaatataga 33247360  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 5355587 - 5355629
Alignment:
Q  146 ttttaggttcattgaataattaatatatcttattataaatata 188  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||    
T  5355587 ttttaggttcatagaataattaatgtatcttattgtaaatata 5355629  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 13278904 - 13278970
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatatagattag 194  Q
    ||||| ||| ||||||||||||||||| |||||||| |||||  ||||  ||||||||||| |||||    
T  13278904 tataagaaacaattgattttttaggtttattgaatagttaatgcatctcgttataaatataaattag 13278970  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 32020457 - 32020415
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaata 170  Q
    ||||||||| |||| |||||||||||||||| |||||||||||    
T  32020457 tataaaaaacaattcattttttaggttcattaaataattaata 32020415  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 173
Target Start/End: Original strand, 6761068 - 6761097
Alignment:
Q  144 ttttttaggttcattgaataattaatatat 173  Q
    ||||||||||||||||||||||||||||||    
T  6761068 ttttttaggttcattgaataattaatatat 6761097  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 8235507 - 8235462
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatat 173  Q
    ||||| ||| |||||||||||||| || ||||||||||||||||||    
T  8235507 tataagaaaaaattgattttttagatttattgaataattaatatat 8235462  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 33970796 - 33970727
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    |||||||| ||||| ||| | |||||| ||||| ||||| ||||||||||| ||| |||||| |||||||    
T  33970796 ggtccttattataagaaaaagttgattgtttagtttcatagaataattaatgtattttattaaaaatata 33970727  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 7537160 - 7537120
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattg 159  Q
    |||||||| ||||||||| |||||||||||| |||||||||    
T  7537160 ggtccttattataaaaaacaattgatttttttggttcattg 7537120  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 13932603 - 13932563
Alignment:
Q  116 tctggtccttaatataaaaaataattgattttttaggttca 156  Q
    ||||||||||| ||||| |||||||||| ||||||||||||    
T  13932603 tctggtccttattataagaaataattgactttttaggttca 13932563  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 32455251 - 32455207
Alignment:
Q  146 ttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    ||||| |||||| ||||||||||| ||||||||| ||||||||||    
T  32455251 ttttaagttcatagaataattaatgtatcttattgtaaatataga 32455207  T

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Target: scaffold0200 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 25754 - 25682
Alignment:
Q  119 ggtccttaatataaaaaataattga-ttttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| ||| | |||| ||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  25754 ggtccttattataagaaaaagttgacttttttacgttcatagaataattaatgtatcttattataaatataga 25682  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 40330 - 40259
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| |||   |||| ||||||| |||||||| ||||||||||||||| || ||||||||||    
T  40330 ggtccttattataagaaacttttgactttttagattcattgagtaattaatatatcttgttgtaaatataga 40259  T

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Target: scaffold0059 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 26725 - 26654
Alignment:
Q  119 ggtccttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||||||| ||||| |||   |||||||||||| |||||||| |||||||| |||||| || ||||||||||    
T  26725 ggtccttattataagaaacttttgattttttagattcattgagtaattaatgtatcttgttgtaaatataga 26654  T

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Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 5549 - 5482
Alignment:
Q  123 cttaatataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatataga 190  Q
    |||| ||||| |||||||||| ||||||| ||||||||||||||||| |||  | | |||||||||||    
T  5549 cttattataagaaataattgactttttagattcattgaataattaatgtatactgtaataaatataga 5482  T

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Target: scaffold0287 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 12750 - 12795
Alignment:
Q  114 cttctggtccttaatataaaaaataattgattttttaggttcattg 159  Q
    ||||||||||||| ||||| ||||| |||| |||||||||||||||    
T  12750 cttctggtccttattataagaaatatttgactttttaggttcattg 12795  T

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Target: scaffold0474 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 11768 - 11828
Alignment:
Q  128 tataaaaaataattgattttttaggttcattgaataattaatatatcttattataaatata 188  Q
    ||||| ||| |||||||||| ||| |  ||||||||||||||||||||| ||||| |||||    
T  11768 tataagaaacaattgattttgtagataaattgaataattaatatatcttgttatatatata 11828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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