View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_66 (Length: 250)
Name: NF21347_low_66
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_66 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 48964182 - 48964417
Alignment:
| Q |
15 |
tatcaccgttcaaaaagatatactcgttattaccatcacacaattgagcaaatagcaaattgaagatattttgtacatctcataaatcaaactttctaaa |
114 |
Q |
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| T |
48964182 |
tatcaccgttcaaaaagatatactcgttattaccatcacacaattgagcaaatagcaaattgaagatattttgtacatctcataaatcaaactttctaaa |
48964281 |
T |
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| Q |
115 |
tggctgcaattgccttcaatattttcccttcaatttcaaaacactgaataaataattcaaagctttgtgttgtatatatatgatccccaaatggatgaat |
214 |
Q |
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| T |
48964282 |
tggctgcaattgccttcaatattttcccttcaatttcaaaacactgaataaataattcaaagctttgtgttgtatatatatgatccccaaatggatgaat |
48964381 |
T |
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| Q |
215 |
gattttgttttaccttagatatatgagttagattcc |
250 |
Q |
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| T |
48964382 |
gattttgttttaccttagatatatgagttagattcc |
48964417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 48959850 - 48959961
Alignment:
| Q |
63 |
caaatagcaaattgaagatattttgtacatctcataaatcaaactttctaaatggctgcaattgccttcaatattttcccttcaatttcaaaacactgaa |
162 |
Q |
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| T |
48959850 |
caaatagcaaattgaagacatattgtacatcttaaaaatcaaactttcctgctagttgtaattgccttcattttttcctcttcaatttcaaaacactgaa |
48959949 |
T |
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| Q |
163 |
taaataattcaa |
174 |
Q |
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| T |
48959950 |
aaaaaaattcaa |
48959961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 48959982 - 48960014
Alignment:
| Q |
203 |
aaatggatgaatgattttgttttaccttagata |
235 |
Q |
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| T |
48959982 |
aaatggatgaataattttgttttaccttagata |
48960014 |
T |
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