View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_67 (Length: 247)
Name: NF21347_low_67
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9834238 - 9834007
Alignment:
| Q |
1 |
gataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattcacaaactttcaaaacatt |
100 |
Q |
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| T |
9834238 |
gataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattcacaaactttcaaaacatt |
9834139 |
T |
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| Q |
101 |
attttcattgtttccaagctttttgatcccctaagctttttgatccaaggtttggcatgcacgttacaagaccacttagttttattgccaattagtgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9834138 |
attttcattgtttccaagctttttgatcccctaagctttttgatccaaggtttggcatgcacgttacaagaccacttagttttattgccaattaatgtct |
9834039 |
T |
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| Q |
201 |
cagattgtcagtcatgaagcaaactaattcat |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9834038 |
cagattgtcagtcatgaagcaaactaattcat |
9834007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9845119 - 9845003
Alignment:
| Q |
1 |
gataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattcacaaactttcaaaacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9845119 |
gataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattcacaaactttcaaaacatt |
9845020 |
T |
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| Q |
101 |
attttcattgtttccaa |
117 |
Q |
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| T |
9845019 |
attttcattgtttccaa |
9845003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 9844930 - 9844826
Alignment:
| Q |
128 |
cccctaagctttttgatccaaggtttggcatgcacgttacaagaccacttagttttattgccaattagtgtctcagattgtcagtcatgaagcaaactaa |
227 |
Q |
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| T |
9844930 |
cccctaagctttttgatccaaggtttggcatgcacgttacaagaccacttagttttattgccaattagtgtctcagattgtcagtcatgaagcaaactaa |
9844831 |
T |
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| Q |
228 |
ttcat |
232 |
Q |
| |
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||||| |
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| T |
9844830 |
ttcat |
9844826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14335371 - 14335307
Alignment:
| Q |
1 |
gataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattga |
66 |
Q |
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||||||||||| |||||||||||||| ||| |||| |||||| |||| ||||||||||||||||| |
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| T |
14335371 |
gataaaataaa-cattagagaagacattatggaagtttttgaccatacattttaaaaatagattga |
14335307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 3370166 - 3370235
Alignment:
| Q |
32 |
gaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattc-acaaactttcaaaacatt |
100 |
Q |
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|||| |||||||| ||| || |||||||||||||||| ||||| ||||||| | ||| |||||||||||| |
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| T |
3370166 |
gaagtttttgaaagtacattctaaaaatagattgaatattttttaaaattctaaaaaatttcaaaacatt |
3370235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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