View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_77 (Length: 234)
Name: NF21347_low_77
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_77 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 22209467 - 22209248
Alignment:
| Q |
1 |
atatatggtacatcgacattggagctttgtcccaaacagcggcatcccaaggtaatctcgtcttattctaatttgagtcatttaaatcagaaactggttt |
100 |
Q |
| |
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||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22209467 |
atatatggtacatggacactggagcttcgtcccaaacagcggcatcccaaggtaatctcgtcttattctaatttgagtcatttaaatcagaaactgattt |
22209368 |
T |
|
| Q |
101 |
ttggcagtggataaggtatta----tcaagggtctgatcacacaaccatacctacatctcacaaatataaaacc----ttagaccttaaccatgtcttaa |
192 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
22209367 |
ttggcagtggataaggtattacaattcaagggtctgatcacacaaccatacctacatctcacaaatacaaaaccttaattagaccttaaccatgtcttaa |
22209268 |
T |
|
| Q |
193 |
acacaatacaaattattaaa |
212 |
Q |
| |
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||| || ||||||||||||| |
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|
| T |
22209267 |
acagaacacaaattattaaa |
22209248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 23581288 - 23581507
Alignment:
| Q |
5 |
atggtacatcgacattggagctttgtcccaaacagcggcatcccaaggtaatctcg--tcttattctaatttgagtcatttaaatcagaaactggttttt |
102 |
Q |
| |
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||||||||| |||| | |||||| ||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| || |
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| T |
23581288 |
atggtacatggacactagagcttcatcccatacagcggcatcccaaagtaatctctcatcttattttaatttgagtcatttaaatcagaaactggttgtt |
23581387 |
T |
|
| Q |
103 |
ggcagtggataaggtatt----atcaagggtctgatcacacaaccatacctacatctcacaaatataaaaccttagaccttaaccatgtcttaaacacaa |
198 |
Q |
| |
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||||||||| |||||||| | |||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
23581388 |
ggcagtggacaaggtattccaattaaagggtctagtcacacaaccatacttacatctcacaatcacaaaaccttagaccttaaccatgtcttactcacac |
23581487 |
T |
|
| Q |
199 |
tacaaattattaaaattttg |
218 |
Q |
| |
|
|||||||||||||| |||| |
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| T |
23581488 |
cacaaattattaaaaatttg |
23581507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 48102498 - 48102279
Alignment:
| Q |
5 |
atggtacatcgacattggagctttgtcccaaacagcggcatcccaaggtaatctc--gtcttattctaatttgagtcatttaaatcagaaactggttttt |
102 |
Q |
| |
|
||||||||| |||| |||||||| ||||| ||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||| || || |
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| T |
48102498 |
atggtacatggacactggagcttcatcccatacagcggcatctcacggtaatctctcgtcttattctaatttgagtaatttaaatcagaaactgattgtt |
48102399 |
T |
|
| Q |
103 |
ggcagtggataaggtatt----atcaagggtctgatcacacaaccatacctacatctcacaaatataaaaccttagaccttaaccatgtcttaaacacaa |
198 |
Q |
| |
|
||||||||| |||||||| || |||||||| |||||||||| ||||||||||||||||| | || |||||| ||||||||||||| ||| | || |
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| T |
48102398 |
ggcagtggacaaggtattccaattctagggtctggtcacacaaccttacctacatctcacaaacacaagaccttaaaccttaaccatgttttacatactc |
48102299 |
T |
|
| Q |
199 |
tacaaattattaaaattttg |
218 |
Q |
| |
|
|||||||||||||| |||| |
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| T |
48102298 |
cacaaattattaaaaatttg |
48102279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 9935216 - 9934997
Alignment:
| Q |
5 |
atggtacatcgacattggagctttgtcccaaacagcggcatcccaaggtaatctc--gtcttattctaatttgagtcatttaaatcagaaactggttttt |
102 |
Q |
| |
|
||||||||| |||| |||||||| ||||| ||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||| || || |
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|
| T |
9935216 |
atggtacatggacactggagcttcatcccatacagcggcatctcacggtaatctctcgtcttattctaatttgagtaatttaaatcagaaactgattgtt |
9935117 |
T |
|
| Q |
103 |
ggcagtggataaggtatt----atcaagggtctgatcacacaaccatacctacatctcacaaatataaaaccttagaccttaaccatgtcttaaacacaa |
198 |
Q |
| |
|
||||||||| |||||||| || |||||||| |||||||||| ||||||||||||||||| | || |||||| ||||||||||||| ||| | || |
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|
| T |
9935116 |
ggcagtggacaaggtattccaattctagggtctggtcacacaaccttacctacatctcacaaacacaagaccttaaaccttaaccatgttttacatactc |
9935017 |
T |
|
| Q |
199 |
tacaaattattaaaattttg |
218 |
Q |
| |
|
|||||||||||||| |||| |
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| T |
9935016 |
cacaaattattaaaaatttg |
9934997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 4703141 - 4703300
Alignment:
| Q |
63 |
ttattctaatttgagtcatttaaatcagaaactggtttttggcagtggataaggtatta----tcaagggtctgatcacacaaccatacctacatctcac |
158 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| || |||| |||||| |||||||| ||||||||||| ||||||||| ||| |||||||||| |
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| T |
4703141 |
ttattctaattggagtcatttaaattagaaactaattgttggtagtggacaaggtattccaattcaagggtctggtcacacaactttacttacatctcac |
4703240 |
T |
|
| Q |
159 |
aaatataaaaccttagaccttaaccatgtcttaaacacaatacaaattattaaaattttg |
218 |
Q |
| |
|
||| | ||| ||||| |||||||| |||| ||| ||||| |||||||||||||| |||| |
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|
| T |
4703241 |
aaacacaaacccttaaaccttaacaatgttttacacacaccacaaattattaaaaatttg |
4703300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 10238 - 10394
Alignment:
| Q |
59 |
cgtcttattctaatttgagtcatttaaatcagaaactggtttttggcagtggataaggtatt----atcaagggtctgatcacacaaccatacctacatc |
154 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| || ||||| || |||||||||| || ||| |||| ||||||||| |||||||||| |
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|
| T |
10238 |
cgtcttattctagtttgaatcatttaaatcagaaactgattgttggctatgaataaggtattttaattcgaggatctggtcacacaactttacctacatc |
10337 |
T |
|
| Q |
155 |
tcacaaatataaaaccttagaccttaaccatgtcttaaacacaatacaaattattaa |
211 |
Q |
| |
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||||||| | ||| |||| |||||||| |||| ||| ||||| |||| ||||||| |
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| T |
10338 |
tcacaaacacaaaccctttaaccttaacaatgttttacacacaccacaagttattaa |
10394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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