View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_93 (Length: 203)
Name: NF21347_low_93
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 13380834 - 13381003
Alignment:
| Q |
15 |
aatataacatcaaagtgcgtggcataattatcagttacaactttcataatgtaattttggtaagccagacacaaaaccaaaactatgaaatacatcaagc |
114 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13380834 |
aatataacaacaaagtgtgtggcataattatcagttacaactttcataatgtaattttggtaagccagacacaaaaccaaaactatgaaatacatcaagc |
13380933 |
T |
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| Q |
115 |
aaaagaaagggaagtcataagggattgactttgtggccaacatacaaaactggaggcatcagctctattttc |
186 |
Q |
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||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13380934 |
gaaagaaagggaagtcataaggaat--actttatggccaacatacaaaactggaggcatcagctctattttc |
13381003 |
T |
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Target: chr8 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 3859009 - 3859180
Alignment:
| Q |
15 |
aatataacatcaaagtgcgtggcataattatcagttacaactttcataatgtaattttggtaagccagacacaaaaccaaaactatgaaatacatcaagc |
114 |
Q |
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||||| ||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||| |
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| T |
3859009 |
aatattacaacaaagtgtgtggcataattatctgttacaactttcagaatgtaattttggtaagccaatcacataaccaaaactatacaatacatcaagc |
3859108 |
T |
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| Q |
115 |
aaaagaaagggaagtcataagggattgactttgtggccaacatacaaaactggaggcatcagctctattttc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
3859109 |
aaaagaaagggaagtcataagggattgactttgtggtcaacatacaaaactggaggcctcagctctattttc |
3859180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 44596084 - 44595913
Alignment:
| Q |
15 |
aatataacatcaaagtgcgtggcataattatcagttacaactttcataatgtaattttggtaagccagacacaaaaccaaaactatgaaatacatcaagc |
114 |
Q |
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||||| ||| ||||||| ||||||| |||||| ||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |
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| T |
44596084 |
aatattacaacaaagtgtgtggcatgattatctgttgcaactttcagaatgtaattttgataagccagacacagaaccaaaactatgcaatacatcaagc |
44595985 |
T |
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| Q |
115 |
aaaagaaagggaagtcataagggattgactttgtggccaacatacaaaactggaggcatcagctctattttc |
186 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44595984 |
aaaagaaagggaagtcataagggattggctttgtggtcaacatacaaaactggaggcatcagctctattttc |
44595913 |
T |
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