View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21348_high_2 (Length: 431)

Name: NF21348_high_2
Description: NF21348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21348_high_2
NF21348_high_2
[»] chr3 (6 HSPs)
chr3 (19-269)||(1529261-1529511)
chr3 (268-335)||(33365925-33365993)
chr3 (220-268)||(42655869-42655917)
chr3 (217-265)||(52041307-52041355)
chr3 (224-268)||(1141840-1141884)
chr3 (217-265)||(22424293-22424341)
[»] chr2 (4 HSPs)
chr2 (268-417)||(10983079-10983228)
chr2 (182-265)||(29280184-29280267)
chr2 (217-268)||(38996443-38996494)
chr2 (268-335)||(3081203-3081271)
[»] chr4 (5 HSPs)
chr4 (267-335)||(31525509-31525578)
chr4 (182-265)||(9451341-9451424)
chr4 (195-265)||(24257803-24257873)
chr4 (227-265)||(27067973-27068011)
chr4 (268-315)||(23538245-23538293)
[»] chr1 (4 HSPs)
chr1 (268-335)||(49195465-49195533)
chr1 (268-335)||(12606643-12606711)
chr1 (268-335)||(40908316-40908384)
chr1 (268-335)||(46566569-46566637)
[»] chr5 (2 HSPs)
chr5 (268-335)||(43469612-43469680)
chr5 (268-335)||(12870155-12870223)
[»] chr7 (3 HSPs)
chr7 (268-335)||(10646115-10646183)
chr7 (162-265)||(20077210-20077313)
chr7 (272-315)||(4658704-4658748)
[»] chr6 (1 HSPs)
chr6 (217-265)||(21762121-21762169)
[»] scaffold0238 (1 HSPs)
scaffold0238 (268-336)||(5100-5169)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 1529511 - 1529261
Alignment:
Q  19 tgtagtgcagaatttcgagaataggtgagagtaaaagaatgtgatctataatgcattggaaaaggcaaagcaagttgttaacagaacatacatgtagata 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529511 tgtagtgcagaattttgagaataggtgagagtaaaagaatgtgatctataatgcattggaaaaggcaaagcaagttgttaacagaacatacatgtagata 1529412  T
Q  119 gtggcatgggaggcacattggaaacaaagaataggtgagacgctatttaatgcaatcatccatatgccttaggtagatgcatcggcagactcaatttttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529411 gtggcatgggaggcacattggaaacaaagaataggtgagacgctatttaatgcaatcatccatatgccttaggtagatgcatcggcagactcaatttttt 1529312  T
Q  219 gtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaaacat 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529311 gtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaaacat 1529261  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 33365925 - 33365993
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  33365925 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctcc 33365993  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 42655917 - 42655869
Alignment:
Q  220 tgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaaaca 268  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  42655917 tgggagggaaatttaaaaattgaacttagcttgatgagtaggaaaaaca 42655869  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 52041307 - 52041355
Alignment:
Q  217 ttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 265  Q
    |||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  52041307 ttgtaggagggaaatttaaaaattgaacttagcttgatgagtaggaaaa 52041355  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 1141884 - 1141840
Alignment:
Q  224 agggaaatttaaaatttgaacttagtttgatgagtaggaaaaaca 268  Q
    |||||||||||||| ||||||| || ||| |||||||||||||||    
T  1141884 agggaaatttaaaaattgaactcagcttgttgagtaggaaaaaca 1141840  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 22424293 - 22424341
Alignment:
Q  217 ttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 265  Q
    |||||||||||||||| |||| || ||||||| || |||||||||||||    
T  22424293 ttgtgggagggaaattcaaaaattcaacttagcttaatgagtaggaaaa 22424341  T

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Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 268 - 417
Target Start/End: Complemental strand, 10983228 - 10983079
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagtttgccctaaacaatcctgattttccctcctaagccgtcattaattgcaaggcttatctgcc 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  10983228 atcctttattataaaagccagacttgatgagctggcagtttgccctaatcaatcctgattttccctcctaattcgtcattaattgcaaggcttatctgcc 10983129  T
Q  368 aaccacccacttcctcttgggcgcatttattgtgacctttcatgtacatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10983128 aaccacccacttcctcttgggcgcatttattgtgacctttcatgtacatc 10983079  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 29280267 - 29280184
Alignment:
Q  182 atgccttaggtagatgcatcggcagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 265  Q
    |||| |||| || |||||| ||||||||| ||   ||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  29280267 atgcattagatacatgcattggcagactccataggttgtgggagggaaatttaaaaattgaacttagcttgatgagtacgaaaa 29280184  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 38996443 - 38996494
Alignment:
Q  217 ttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaaaca 268  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  38996443 ttgtaggagggaaatttaaaatttgaacttaacttgatgagtaggaaaaaca 38996494  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 3081203 - 3081271
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||||| ||  ||| |||||||||||    
T  3081203 atcctttactattaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctcc 3081271  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 31525578 - 31525509
Alignment:
Q  267 catcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  31525578 catcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctcc 31525509  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 9451424 - 9451341
Alignment:
Q  182 atgccttaggtagatgcatcggcagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 265  Q
    |||| |||| || |||||| ||||||||| ||   ||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  9451424 atgcattagatatatgcattggcagactccataggttgtgggagggaaatttaaaaattgaacttagcttgatgagtacgaaaa 9451341  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 24257873 - 24257803
Alignment:
Q  195 atgcatcggcagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 265  Q
    |||||| |||||||| |||   |||||||||||| || ||||| |||||||||||||||||| ||||||||    
T  24257873 atgcattggcagactgaataggttgtgggagggagatataaaaattgaacttagtttgatgattaggaaaa 24257803  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 27068011 - 27067973
Alignment:
Q  227 gaaatttaaaatttgaacttagtttgatgagtaggaaaa 265  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  27068011 gaaatttaaattttgaacttagcttgatgagtaggaaaa 27067973  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 23538293 - 23538245
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 315  Q
    |||||||||||| |||| ||||||||||||||| ||||| |||||||||    
T  23538293 atcctttattattaaagtcagacttgatgagctagcagtgttgccctaa 23538245  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 49195533 - 49195465
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  49195533 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctcc 49195465  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 12606711 - 12606643
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||| || |||| |||||||||||    
T  12606711 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccttattttccctcc 12606643  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 40908316 - 40908384
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| ||  ||| |||||||||||    
T  40908316 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctcc 40908384  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 46566569 - 46566637
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||| || | || |||||||||||    
T  46566569 atcctttattataaaagccagatttgatgagctggcagtgttgccctaatcacttcttattttccctcc 46566637  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 43469680 - 43469612
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || | || |||||||||||    
T  43469680 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcc 43469612  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 12870155 - 12870223
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| || | ||| ||||||||||    
T  12870155 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcacttctgtttttccctcc 12870223  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 10646183 - 10646115
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 335  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||| || | || |||||||||||    
T  10646183 atcctttattctaaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcc 10646115  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 265
Target Start/End: Original strand, 20077210 - 20077313
Alignment:
Q  162 tatttaatgcaatcatccatatgccttaggtagatgcatcggcagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtagg 261  Q
    |||| ||||| |||||||||||||||||| || |||||||  || |||| | || || |||||| |||||||| ||||||||| ||   |||||| ||||    
T  20077210 tattaaatgccatcatccatatgccttagatacatgcatccacaaactctaattgttatgggagcgaaatttagaatttgaacctaaagtgatgattagg 20077309  T
Q  262 aaaa 265  Q
    ||||    
T  20077310 aaaa 20077313  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 4658748 - 4658704
Alignment:
Q  272 tttattataaaagccagacttgatgagctggca-gtttgccctaa 315  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||    
T  4658748 tttattataaaagctagacttgatgagctagcatgtttgccctaa 4658704  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 21762169 - 21762121
Alignment:
Q  217 ttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 265  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  21762169 ttgtgggagggaaatttaaaaattgaacttagcttgatgagtaggaaaa 21762121  T

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Target: scaffold0238 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 5100 - 5169
Alignment:
Q  268 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcct 336  Q
    |||||||| ||||||||||||| |||||| ||||||||| ||| ||||| || |||| ||||| ||||||    
T  5100 atcctttactataaaagccagatttgatgtgctggcagtgttgtcctaatcactccttatttttcctcct 5169  T

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