View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21349_high_3 (Length: 203)
Name: NF21349_high_3
Description: NF21349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21349_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 3263496 - 3263671
Alignment:
| Q |
10 |
acatcatcatactactaaatcttaaacacatcataataacaaaattcacatcaaacttcaatcattgaaacaattccaaccactttcacacaaaaaacac |
109 |
Q |
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| T |
3263496 |
acataatcatactactaaatcttaaacacaacataataacaaa-ttcacatcaaatttcaatcattgaaacaattccaaccactttcacacaaaa-acac |
3263593 |
T |
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| Q |
110 |
agacgaatttcacaatcttcaaactacaattccccatatcaaatctaacttttttataacaattgaagataaaaatca |
187 |
Q |
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| T |
3263594 |
agacaaatttcacaatcttcaaactacaattccccatatcaaatctaacttttttataacaattgaagataaaaatca |
3263671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 3263343 - 3263434
Alignment:
| Q |
46 |
taacaaaattcacatcaaacttcaatcattgaaacaattccaaccactttcacacaaaaaacacagacgaatttcacaatcttcaaactacaa |
138 |
Q |
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|||||||||| | |||||| |||||||||| ||||||||||| | |||| |||||| |||||||| ||||| ||||||||||||| |||| |
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| T |
3263343 |
taacaaaatttatatcaaaattcaatcattccgacaattccaactaatttcctacaaaa-acacagacaaatttaacaatcttcaaaccacaa |
3263434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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