View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21349_low_2 (Length: 363)
Name: NF21349_low_2
Description: NF21349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21349_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 43120377 - 43120549
Alignment:
| Q |
20 |
ccgttggagtggaaattctctcaggtctttggtgaacgtacggctggtgaagaggttcaggaaggtaatttgtttgtacaacgttgtatttggtttgaaa |
119 |
Q |
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| T |
43120377 |
ccgttggagtggaaattctctcaggtctttggtgaacgtacggctggtgaagaggttcaggaaggtaatttgtttgtacaacgttgtatttggtttgaaa |
43120476 |
T |
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| Q |
120 |
aagacatgttttttatgttgagtttgttggattggatccaatttttgtggtgaggttagggtttgattcgatc |
192 |
Q |
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| T |
43120477 |
aagacatgttttttatgttgagtttgttggattggatccaatttttgtggtggggttagggtttgattcgatc |
43120549 |
T |
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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 25289650 - 25289572
Alignment:
| Q |
108 |
tttggtttgaaaaagacatgttttttatgttgagtttgttggattggatccaatttttgtggtgaggttagggtttgatt |
187 |
Q |
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| T |
25289650 |
tttggttggaaaaagacatgtttttt-tgttgagtttgttggattggatccaatttttgtggtggggttagggcttgatt |
25289572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 25289473 - 25289394
Alignment:
| Q |
31 |
gaaattctctcaggtctttggtgaacgtacggctggtgaagaggttcaggaaggtaatttgtttgtacaacgttgtattt |
110 |
Q |
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| T |
25289473 |
gaaattctctaaggtgtttggtgaacgtacaacttttgaagaggttcatgaaggtaatttgtttgtacaactttctattt |
25289394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 5233922 - 5233852
Alignment:
| Q |
19 |
accgttggagtggaaattctctcaggtctttggtgaacgtacggctggtgaagaggttcaggaaggtaatt |
89 |
Q |
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| T |
5233922 |
accgttggagtggaaattctcgcaggtttttggtgaacgtgcggctggagaggaagttcaggaaggtaatt |
5233852 |
T |
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