View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21349_low_4 (Length: 254)

Name: NF21349_low_4
Description: NF21349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21349_low_4
NF21349_low_4
[»] chr1 (6 HSPs)
chr1 (16-220)||(26650722-26650926)
chr1 (11-117)||(13891140-13891247)
chr1 (11-78)||(10106429-10106496)
chr1 (119-159)||(39746951-39746991)
chr1 (186-220)||(19406480-19406514)
chr1 (16-58)||(39747002-39747044)
[»] chr7 (5 HSPs)
chr7 (21-220)||(24528695-24528884)
chr7 (16-220)||(33226682-33226876)
chr7 (11-129)||(9973791-9973909)
chr7 (88-165)||(28292174-28292251)
chr7 (21-79)||(47761966-47762024)
[»] chr8 (8 HSPs)
chr8 (16-220)||(31030864-31031058)
chr8 (16-165)||(19430347-19430494)
chr8 (16-165)||(19566496-19566643)
chr8 (16-117)||(33616385-33616486)
chr8 (92-166)||(19435838-19435910)
chr8 (92-166)||(19571987-19572059)
chr8 (186-220)||(19435909-19435943)
chr8 (186-220)||(19572058-19572092)
[»] chr4 (8 HSPs)
chr4 (16-220)||(10120137-10120341)
chr4 (23-220)||(24490374-24490571)
chr4 (17-144)||(30564045-30564172)
chr4 (16-124)||(10120461-10120569)
chr4 (11-78)||(653370-653438)
chr4 (22-101)||(10318450-10318529)
chr4 (11-99)||(15498965-15499054)
chr4 (25-108)||(17359841-17359925)
[»] chr3 (10 HSPs)
chr3 (16-220)||(20810707-20810908)
chr3 (11-160)||(13022354-13022504)
chr3 (21-216)||(26962398-26962592)
chr3 (16-99)||(38436635-38436718)
chr3 (16-158)||(33088972-33089103)
chr3 (16-130)||(53119864-53119977)
chr3 (17-129)||(6025499-6025608)
chr3 (21-94)||(26928942-26929015)
chr3 (181-220)||(13022506-13022545)
chr3 (149-199)||(38436566-38436616)
[»] scaffold0011 (2 HSPs)
scaffold0011 (21-220)||(1906-2093)
scaffold0011 (16-132)||(7382-7497)
[»] chr6 (7 HSPs)
chr6 (22-144)||(11956335-11956457)
chr6 (21-205)||(17289934-17290118)
chr6 (105-197)||(10485473-10485565)
chr6 (25-113)||(3902617-3902705)
chr6 (111-220)||(19478512-19478611)
chr6 (25-113)||(3902259-3902348)
chr6 (22-144)||(17281194-17281319)
[»] chr5 (2 HSPs)
chr5 (11-78)||(7805397-7805464)
chr5 (11-63)||(13582405-13582458)
[»] chr2 (1 HSPs)
chr2 (52-136)||(42914999-42915082)
[»] scaffold0067 (1 HSPs)
scaffold0067 (22-96)||(33645-33719)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 26650926 - 26650722
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  26650926 gggggcgagctctccttttgtaggaggagttcgtaacaaaaaacgagatacttagagattaagtctgcttaatccttaagcaaacgcgtttttgtttctt 26650827  T
Q  116 aaatggatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgattagat 215  Q
    || |||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  26650826 aattggatatatccggaaacttctggatactcgttttggatcgggtcggatcgtaacaatctcatttgttatgcgtagcgctttcggataatgattagat 26650727  T
Q  216 taatt 220  Q
    |||||    
T  26650726 taatt 26650722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 13891140 - 13891247
Alignment:
Q  11 aatgagggga-cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttg 109  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  13891140 aatgaggggagcgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaagtctgcttaatccttaagcaaacgcgtttttg 13891239  T
Q  110 tttcttaa 117  Q
    ||||||||    
T  13891240 tttcttaa 13891247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 10106429 - 10106496
Alignment:
Q  11 aatgagggga-cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaag 78  Q
    |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  10106429 aatgaggggagcgagctctccttttataggaggagttcgtaac-aaaaacgagatacttggggattaag 10106496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 39746991 - 39746951
Alignment:
Q  119 tggatacatccggaaacttctggatattcgttttggatcgg 159  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  39746991 tggatatatccggaaacttctggatactcgttttggatcgg 39746951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 19406514 - 19406480
Alignment:
Q  186 acgcgtagcgctttcggataatgattagattaatt 220  Q
    |||||||||||||| ||||||||||||||||||||    
T  19406514 acgcgtagcgcttttggataatgattagattaatt 19406480  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 39747044 - 39747002
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaa 58  Q
    |||| |||||||||||||||||| | |||||||||||||||||    
T  39747044 gggggcgagctctccttttataggaagagttcgtaacaaaaaa 39747002  T

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Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 24528695 - 24528884
Alignment:
Q  21 cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttcttaaatg 120  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||    
T  24528695 cgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaagtctgcttaatccttaagcaaacgcatttttgtttcttaattg 24528794  T
Q  121 gatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgattagattaatt 220  Q
    |||| ||||||||||||||||||| |||||||||||          ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24528795 gatatatccggaaacttctggatactcgttttggat----------cgtaacaatctcatttgttacgcgtagcgctttcggataatgattagattaatt 24528884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 33226682 - 33226876
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  33226682 gggggcgagctctccttttataggaggagttcgtaacaaaaaacgagagacttggggattaagtctgcttaatccttaagtaaacgcgtttttgtttctt 33226781  T
Q  116 aaatggatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgattagat 215  Q
    || |||||| ||| ||||||||||||||| ||||||| |||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33226782 aattggatatatctggaaacttctggatactcgttttagat----------cgtaacaatttcatttgttacgcgtagcgctttcggataatgattagat 33226871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 9973791 - 9973909
Alignment:
Q  11 aatgagggga-cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttg 109  Q
    |||||||||| |||||||||||||||||| | ||||| |||||||||||||||| |||| ||||||||||  |||||||||| ||| ||||||| |||||    
T  9973791 aatgaggggagcgagctctccttttataggaagagtttgtaacaaaaaacgagagacttggggattaagtcggcttaatcctcaagtaaacgcg-ttttg 9973889  T
Q  110 tttcttaaatggatacatcc 129  Q
    |||||||| |||||| ||||    
T  9973890 tttcttaattggatatatcc 9973909  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 28292251 - 28292174
Alignment:
Q  88 tccttaagcaaacgcgtttttgtttcttaaatggatacatccggaaacttctggatattcgttttggatcggatcgga 165  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||||    
T  28292251 tccttaagcaaacgcatttttgtttcttaattggatatatccggaaacttctggatactcgttttggatcgggtcgga 28292174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 47761966 - 47762024
Alignment:
Q  21 cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagt 79  Q
    ||||||||| ||||||||   |||||||||||||||||||||  ||||| |||||||||    
T  47761966 cgagctctcattttataggcagagttcgtaacaaaaaacgagtaacttaaggattaagt 47762024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 31030864 - 31031058
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31030864 gggggcgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaagtctgcttaatccttaagcaaacgcgtttttgtttctt 31030963  T
Q  116 aaatggatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgattagat 215  Q
    || | |||| ||||||||||||||||||| |||||||||||          ||||||||  |||  ||||||||||||||||||||||||||||||||||    
T  31030964 aatttgatatatccggaaacttctggatactcgttttggat----------cgtaacaacctcacgtgttacgcgtagcgctttcggataatgattagat 31031053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 19430347 - 19430494
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||  ||    
T  19430347 gggggcgagctctccttttataggaggagttcataacaaaaaacgagttacttagggattaagtctgcttaatccttaagcaaacgcgtttttgtt--tt 19430444  T
Q  116 aaatggatacatccggaaacttctggatattcgttttggatcggatcgga 165  Q
    || |||||| ||||||||||||||||||| |||||||||||||| |||||    
T  19430445 aattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19430494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 19566496 - 19566643
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||  ||    
T  19566496 gggggcgagctctccttttataggaggagttcataacaaaaaacgagttacttagggattaagtctgcttaatccttaagcaaacgcgtttttgtt--tt 19566593  T
Q  116 aaatggatacatccggaaacttctggatattcgttttggatcggatcgga 165  Q
    || |||||| ||||||||||||||||||| |||||||||||||| |||||    
T  19566594 aattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19566643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 33616486 - 33616385
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  33616486 gggggcgagctctccttttataggaggagttcataacaaaaaacgagttacttagggattaagtctgcttaatccttaagcaaacgcgtttttatttctt 33616387  T
Q  116 aa 117  Q
    ||    
T  33616386 aa 33616385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 19435838 - 19435910
Alignment:
Q  92 taagcaaacgcgtttttgtttcttaaatggatacatccggaaacttctggatattcgttttggatcggatcggac 166  Q
    ||||||||| |||||||||||  ||| |||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  19435838 taagcaaacacgtttttgttt--taattggatatatccggaaacttctggatactcgttttggatcgggtcggac 19435910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 19571987 - 19572059
Alignment:
Q  92 taagcaaacgcgtttttgtttcttaaatggatacatccggaaacttctggatattcgttttggatcggatcggac 166  Q
    ||||||||| |||||||||||  ||| |||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  19571987 taagcaaacacgtttttgttt--taattggatatatccggaaacttctggatactcgttttggatcgggtcggac 19572059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 19435909 - 19435943
Alignment:
Q  186 acgcgtagcgctttcggataatgattagattaatt 220  Q
    |||||||||||||||||||||||||||||||||||    
T  19435909 acgcgtagcgctttcggataatgattagattaatt 19435943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 19572058 - 19572092
Alignment:
Q  186 acgcgtagcgctttcggataatgattagattaatt 220  Q
    |||||||||||||||||||||||||||||||||||    
T  19572058 acgcgtagcgctttcggataatgattagattaatt 19572092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 10120341 - 10120137
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||  |||||||||| ||| ||||||||||| |||||||    
T  10120341 gggggcgagctctccttttataggaagagttcgtaacaaaaaacgagagacttggggattaagtcggcttaatcctcaagtaaacgcgtttt-gtttctt 10120243  T
Q  116 aaatggatacatccggaaacttctggatattcgtttt-ggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgattaga 214  Q
    || |||||| |||||  |||||||||||| ||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  10120242 aattggatatatccgagaacttctggatactcgtttttggatcgggtcggatcgtaacaattttatttgttacgcatagcgctttcggataatgattaga 10120143  T
Q  215 ttaatt 220  Q
    ||||||    
T  10120142 ttaatt 10120137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 24490374 - 24490571
Alignment:
Q  23 agctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttcttaaatgga 122  Q
    ||||||||||||||||   |||||||||||||||||||||  |||| ||||||||||  |||||||||| ||| |||||||||||  |||||||| ||||    
T  24490374 agctctccttttatagggagagttcgtaacaaaaaacgagtgacttggggattaagtaagcttaatcctcaagtaaacgcgttttcatttcttaattgga 24490473  T
Q  123 tacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgattagattaatt 220  Q
    || ||| |||||||||||||||  ||||||||||||| ||||| |||||| |||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  24490474 tatatctggaaacttctggatacacgttttggatcgggtcggatcgtaacgattttatttgttacgtgtagcgctttccgataatgattaaattaatt 24490571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 30564172 - 30564045
Alignment:
Q  17 gggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctta 116  Q
    ||||||||||||||||||||||   |||||||||||||||||||||  ||||| ||||||||| ||||||||| |||||||| ||||||| |||||||||    
T  30564172 gggacgagctctccttttatagggagagttcgtaacaaaaaacgagtgacttaaggattaagtctgcttaatctttaagcaaccgcgtttatgtttctta 30564073  T
Q  117 aatggatacatccggaaacttctggata 144  Q
      |||||| ||| ||||| |||| ||||    
T  30564072 gttggatatatctggaaaattctagata 30564045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 10120569 - 10120461
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaa-cgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttct 114  Q
    |||| |||||||||||||||||| | ||||||||||||||||| ||||| |||| ||||||||||  |||||||||| ||| ||||||| ||||||||||    
T  10120569 gggggcgagctctccttttataggaagagttcgtaacaaaaaaacgagagacttggggattaagtcggcttaatcctcaagtaaacgcg-ttttgtttct 10120471  T
Q  115 taaatggata 124  Q
    ||| ||||||    
T  10120470 taattggata 10120461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 653370 - 653438
Alignment:
Q  11 aatgagggga-cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaag 78  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||    
T  653370 aatgaggggagcgagctctccttttataggaggagttcgtaactaaaaacgagagacttggggattaag 653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 10318529 - 10318450
Alignment:
Q  22 gagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacg 101  Q
    |||||||||||||||||   ||||| |||||||||||||||  ||||| |||||||||  ||||||||||||||| ||||    
T  10318529 gagctctccttttataggcagagtttgtaacaaaaaacgagtgacttaaggattaagtcagcttaatccttaagctaacg 10318450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 15498965 - 15499054
Alignment:
Q  11 aatgaggggacgagctctccttttatagaaggagttcgtaacaaaaaac-gagatacttagggattaagtttgcttaatccttaagcaaa 99  Q
    |||||| |||| ||||||||||||||||   |||||||||| ||||||| |||  ||||| |||||||||  | ||||||||||||||||    
T  15498965 aatgagaggacaagctctccttttatagggagagttcgtaataaaaaactgagtgacttaaggattaagtcagtttaatccttaagcaaa 15499054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 17359841 - 17359925
Alignment:
Q  25 ctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaa-cgcgttttt 108  Q
    ||||||||||||||   |||||||||||||||   |||  ||||| |||||||||| ||||||||||||| |||| |||||||||    
T  17359841 ctctccttttatagtgagagttcgtaacaaaaccggagtgacttaaggattaagttcgcttaatccttaatcaaaccgcgttttt 17359925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 20810707 - 20810908
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||| |||| |||||||||   |||||||||| ||| |||| |||||| ||||| |    
T  20810707 gggggcgagctctccttttataggaagagttcgtaacaaaaaacgagagacttggggattaagg--gcttaatcctcaagtaaacacgtttt-gtttcgt 20810803  T
Q  116 aaatggatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgattagat 215  Q
    || |||||| ||||||||||||||||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20810804 aattggatatatccggaaacttctggatacttgttttggatcgggtcggatcgtaacaattttatttgttacgcgtagcgctttcggataatgattagat 20810903  T
Q  216 taatt 220  Q
    |||||    
T  20810904 taatt 20810908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 13022354 - 13022504
Alignment:
Q  11 aatgagggga-cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttg 109  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  13022354 aatgaggggagcgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaagtctgcttaatccttaagcgaacgcgtttttg 13022453  T
Q  110 tttcttaaatggatacatccggaaacttctggatattcgttttggatcgga 160  Q
    |||||||| |||||| ||| ||||||||||||||| |||||||||||||||    
T  13022454 tttcttaattggatatatctggaaacttctggatactcgttttggatcgga 13022504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 26962398 - 26962592
Alignment:
Q  21 cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttcttaaatg 120  Q
    |||||||||||||||||| | ||||| ||||||||||||||||  ||| |||||||||| ||||||||||| ||| ||||||||||| ||||||||| ||    
T  26962398 cgagctctccttttataggaagagtttgtaacaaaaaacgagagtcttggggattaagtctgcttaatcctcaagtaaacgcgtttt-gtttcttaattg 26962496  T
Q  121 gatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgattagatt 216  Q
    |||| ||||||||| || ||||||  ||||||||||||| ||||| ||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  26962497 gatatatccggaaagttttggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacgcgcatcgttttcggataatgattagatt 26962592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 38436718 - 38436635
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaa 99  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38436718 gggggcgagctctccttttataggaggagttcgtaacaaaaaacgagatacttagggattaagtctgcttaatccttaagcaaa 38436635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 33089103 - 33088972
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |||||           |||||||||||||||||||    
T  33089103 gggggcgagctctccttttataggaggagttcgtaacaaaaaacgagagacttggggattaagtctgctt-----------aaacgcgtttttgtttctt 33089015  T
Q  116 aaatggatacatccggaaacttctggatattcgttttggatcg 158  Q
    || |||||| ||||||||||||||||||| || ||||||||||    
T  33089014 aattggatatatccggaaacttctggatactcattttggatcg 33088972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 53119864 - 53119977
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| ||||||||||||||| || |||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||| |||||||||||||||| ||    
T  53119864 gggggcgagctctccttttaaaggaggagttcgtaacaaaaa-cgagagacttggggattaagtctgcttaatccttaagtaaacgcgtttttgtttttt 53119962  T
Q  116 aaatggatacatccg 130  Q
    || |||||| |||||    
T  53119963 aattggatatatccg 53119977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 6025499 - 6025608
Alignment:
Q  17 gggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctta 116  Q
    ||||||||| ||||||||||||   ||||| |||||||||||||||  ||||| |||||||||  |||||||| ||||||   ||||||| |||||||||    
T  6025499 gggacgagccctccttttatagggagagtttgtaacaaaaaacgagtgacttaaggattaagtcagcttaatcattaagc---cgcgtttctgtttctta 6025595  T
Q  117 aatggatacatcc 129  Q
      |||||| ||||    
T  6025596 gttggatatatcc 6025608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 26928942 - 26929015
Alignment:
Q  21 cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaa 94  Q
    |||||||| |||||||||   |||||||||||||||||||||  ||||| ||| |||||| |||||||||||||    
T  26928942 cgagctcttcttttataggcagagttcgtaacaaaaaacgagtgacttaaggactaagttagcttaatccttaa 26929015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 13022506 - 13022545
Alignment:
Q  181 ttgttacgcgtagcgctttcggataatgattagattaatt 220  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  13022506 ttgttacgcgtagcgcgttcggataatgattagattaatt 13022545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 38436616 - 38436566
Alignment:
Q  149 ttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgcttt 199  Q
    ||||||||||| ||||| | ||||||| |||||||||||||||||||||||    
T  38436616 ttttggatcgggtcggatcataacaatctcatttgttacgcgtagcgcttt 38436566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 1906 - 2093
Alignment:
Q  21 cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttcttaaatg 120  Q
    |||||||||||||||||| | |||||||||||  ||||||||| |||| ||||||||||  |||||||||| ||| ||| || |||| ||| ||||| ||    
T  1906 cgagctctccttttataggatgagttcgtaaccgaaaacgagacacttggggattaagtcagcttaatcctcaagtaaatgcatttt-gttccttaattg 2004  T
Q  121 gatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgattagattaatt 220  Q
    |||| |||||||  | |           |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2005 gatatatccggactcgt-----------ttttggatcggatcagatcgtatcaatttcatttgttacgcgtagcgctttcggataatgattagattaatt 2093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 7382 - 7497
Alignment:
Q  16 ggggacgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttctt 115  Q
    |||| |||||||||||||||||| | |||||||||||  ||||||||| |||| ||||||||||  |||||||||| ||| ||||||| ||||||| |||    
T  7382 gggggcgagctctccttttataggatgagttcgtaaccgaaaacgagagacttggggattaagtcggcttaatcctcaagtaaacgcg-ttttgttcctt 7480  T
Q  116 aaatggatacatccgga 132  Q
    || |||||| |||||||    
T  7481 aattggatatatccgga 7497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 11956457 - 11956335
Alignment:
Q  22 gagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttcttaaatgg 121  Q
    |||||||||||||||||   |||||||||||||||||||||  ||||| |||||||||  ||||||||||||||||| ||| ||| |||||||||  |||    
T  11956457 gagctctccttttataggtagagttcgtaacaaaaaacgagtgacttaaggattaagtcagcttaatccttaagcaaccgcatttatgtttcttagttgg 11956358  T
Q  122 atacatccggaaacttctggata 144  Q
    ||| ||||||||| |||||||||    
T  11956357 atatatccggaaaattctggata 11956335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 17290118 - 17289934
Alignment:
Q  21 cgagctctccttttatagaaggagttcgtaacaaaaaa--cgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttcttaaa 118  Q
    |||| |||||||||| ||   |||||||||||||||||  ||||  |||| ||||||||||  ||||||| || ||| ||||||||||| |||||||||     
T  17290118 cgagatctccttttacagggagagttcgtaacaaaaaaaacgagtgacttggggattaagtcggcttaattctgaagtaaacgcgtttt-gtttcttaat 17290020  T
Q  119 tggatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggata 205  Q
    |||||| |||||||| ||| || | |  |||||| |||||| ||||| ||||||||||| ||||||||||||||| |||||| ||||    
T  17290019 tggatatatccggaagcttttgaaaacgcgttttagatcgggtcggatcgtaacaattt-atttgttacgcgtagtgctttcagata 17289934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 10485473 - 10485565
Alignment:
Q  105 ttttgtttcttaaatggatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgct 197  Q
    |||||||||||||  | ||| ||||||||||||||| |||  ||||||||||||| ||||| ||||||||||| |||||||||||||||||||    
T  10485473 ttttgtttcttaatagaatatatccggaaacttctgaatacgcgttttggatcgggtcggatcgtaacaattttatttgttacgcgtagcgct 10485565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 3902617 - 3902705
Alignment:
Q  25 ctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttc 113  Q
    ||||||||||||||   |||||||||||||||||||||  ||| | |||||||||  ||||||||||||||||||| ||||||||||||    
T  3902617 ctctccttttataggcagagttcgtaacaaaaaacgagtgactcaaggattaagtcagcttaatccttaagcaaacacgtttttgtttc 3902705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 19478512 - 19478611
Alignment:
Q  111 ttcttaaatggatacatccggaaacttctggatattcgttttggatcggatcggaccgtaacaatttcatttgttacgcgtagcgctttcggataatgat 210  Q
    ||||||| |||||| ||||| ||||||||||||| |||||||||||||          ||| ||||| |||||||||||||||| |||||||||||||||    
T  19478512 ttcttaattggatatatccgaaaacttctggatactcgttttggatcg----------taaaaattttatttgttacgcgtagcactttcggataatgat 19478601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 3902259 - 3902348
Alignment:
Q  25 ctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttg-cttaatccttaagcaaacgcgtttttgtttc 113  Q
    ||||||||||||||   ||||||||||||||||| |||  ||| | ||||||||| || |||||||||||||||||| ||||||||||||    
T  3902259 ctctccttttataggcagagttcgtaacaaaaaatgagtgactcaaggattaagtctgacttaatccttaagcaaacacgtttttgtttc 3902348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 17281319 - 17281194
Alignment:
Q  22 gagctctccttttatagaaggagttcgtaacaaaaaa----cgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttcttaa 117  Q
    |||||||||||||||||   ||||| |||||||||||    ||||  |||| ||||||||||  |||||||||| ||| ||||||| |||||||||||||    
T  17281319 gagctctccttttatagggagagtttgtaacaaaaaaaaaacgagtgacttggggattaagtcggcttaatcctgaagtaaacgcg-ttttgtttcttaa 17281221  T
Q  118 atggatacatccggaaacttctggata 144  Q
      ||||| |||||||| ||||||||||    
T  17281220 tcggatatatccggaagcttctggata 17281194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 7805397 - 7805464
Alignment:
Q  11 aatgagggga-cgagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaag 78  Q
    |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  7805397 aatgaggggagcgagctctccttttataggaggagttcgtaac-aaaaacgagatacttggggattaag 7805464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 13582458 - 13582405
Alignment:
Q  11 aatgagggga-cgagctctccttttatagaaggagttcgtaacaaaaaacgaga 63  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||||||||||    
T  13582458 aatgaggggagcgagctctccttttataggaggagttcataacaaaaaacgaga 13582405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 42914999 - 42915082
Alignment:
Q  52 caaaaaacgagatacttagggattaagtttgcttaatccttaagcaaacgcgtttttgtttcttaaatggatacatccggaaact 136  Q
    |||||||||||| |||| ||||||||||  |||||||||| ||| ||||||| ||||||||||||| |||||| |||||||||||    
T  42914999 caaaaaacgagagacttggggattaagtcggcttaatcctcaagtaaacgcg-ttttgtttcttaattggatatatccggaaact 42915082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 33719 - 33645
Alignment:
Q  22 gagctctccttttatagaaggagttcgtaacaaaaaacgagatacttagggattaagtttgcttaatccttaagc 96  Q
    |||||||||||||||||    ||||||||||||||| ||||  ||||| |||||||||   ||||||||||||||    
T  33719 gagctctccttttataggcatagttcgtaacaaaaatcgagtgacttaaggattaagtcaacttaatccttaagc 33645  T

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