View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2134_high_11 (Length: 221)
Name: NF2134_high_11
Description: NF2134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2134_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 7938414 - 7938231
Alignment:
| Q |
19 |
ataggcagtaatgaactagacctgatcatactgttgacgtttttccccatccttcaaaacctacaaacaataaaagggaaatataccagcagtcagttaa |
118 |
Q |
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| T |
7938414 |
ataggcagtaatgaactagacctgatcatactgttgatgtttttccccatccttcaaaacctacaaacaataaa-gggaaatataccagcagtcagttaa |
7938316 |
T |
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| Q |
119 |
tctgggatatgaaaatggatttaataagagatatgaactgtcaatgtaaaacaattttccactgacatccaatgaaagtctacta |
203 |
Q |
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| T |
7938315 |
tctgggatacgaaaatggatttaataagagatatgaactatcaatgtaaaacagttttccactgacatccaatgaaagtctacta |
7938231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 7925315 - 7925194
Alignment:
| Q |
10 |
tcgaataatataggcagtaatgaactagacctgatcatactgttgacgtttttccccatccttcaaaacctacaaacaataaaagggaaatataccagca |
109 |
Q |
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| T |
7925315 |
tcgaagaaaataggcagtaatggattagacctgatcatactgttgacgtttttccccatccttcaaaacctacaaacattaaaatggaaatataccagca |
7925216 |
T |
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| Q |
110 |
gtcagttaatctgggatatgaa |
131 |
Q |
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| T |
7925215 |
gtcagttaattggggatatgaa |
7925194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 8638706 - 8638660
Alignment:
| Q |
38 |
acctgatcatactgttgacgtttttccccatccttcaaaacctacaa |
84 |
Q |
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| T |
8638706 |
acctgatcatactcttgacgcttttcctcgtccttcaaaacctacaa |
8638660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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