View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2134_high_8 (Length: 253)
Name: NF2134_high_8
Description: NF2134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2134_high_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 12504234 - 12504469
Alignment:
| Q |
18 |
agaggcatcgatgagaataatactatatataattaccacaaactatggagtatgtaaaaaggagaaaggaattatacatgtatctattgatctaatattg |
117 |
Q |
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| T |
12504234 |
agaggcatcgatgagaataatactatatatcattaccacaaactatggagtatgtaaaaaggagaaaggaattatacatgtatctattgaactaatattg |
12504333 |
T |
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| Q |
118 |
tactgtgccggacaagatgatcaatgaaacttaaattcgtttgacccacttaacatcactataaattcacacctccaaatctaataatcacagtagactt |
217 |
Q |
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| T |
12504334 |
tactgtgccggacaagatgatcaatgaaacttaaattcgtttgacccacttaacatcactataaattcacacctccaaatctaataatcacagtagactt |
12504433 |
T |
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| Q |
218 |
tgttagttgttggagacttagacatcatgtgcatcc |
253 |
Q |
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| T |
12504434 |
tgttagttgttggagacttagacatcatgtgcatcc |
12504469 |
T |
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