View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2134_high_9 (Length: 250)
Name: NF2134_high_9
Description: NF2134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2134_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 36631742 - 36631967
Alignment:
| Q |
9 |
gaagaatattagaaacacataacagagacatgcataaaaagaggacgtgattgtatgatatatagccctctatcgttgccgaggaagaggtaatgatgtg |
108 |
Q |
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| T |
36631742 |
gaagaaaattagaaacacagaacagagaaatgcataaaaagaggacgtgattgtatgatatatagccctctatcgttgccgaggaagaggtaatgatgtg |
36631841 |
T |
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| Q |
109 |
gctcaaagtacggtgagtgttaacaggcgtgtgttagagcgtctgtcaataacacttctcttttttataattaatgattagttgcagttactgttgtagt |
208 |
Q |
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| T |
36631842 |
gctcaaagtacggtgagtgttaacaggcgtgtgttagagcgtctgtcaataacacttctcttttttataattaatgattagttgcagttactgttgtagt |
36631941 |
T |
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| Q |
209 |
tatgtgtggtttgtgaataaaataag |
234 |
Q |
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| T |
36631942 |
tatgtgtggtttgtgaataaaataag |
36631967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 36635056 - 36635018
Alignment:
| Q |
196 |
ttactgttgtagttatgtgtggtttgtgaataaaataag |
234 |
Q |
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| T |
36635056 |
ttactgttgtagttatgtgtggtgtgtgaataaaataag |
36635018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 29832097 - 29832014
Alignment:
| Q |
86 |
gccgaggaagaggtaatgatgtggctcaaagtacg-gtgagtgttaacaggcgtgtgttagagcgtctgtcaataacacttctc |
168 |
Q |
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| T |
29832097 |
gccgagcaagaggaaatgacgtggctcaaagtcagagcgagtgttaacaggcgtgtgtttgagcgtctgtctttagcacttctc |
29832014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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