View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2134_low_11 (Length: 241)
Name: NF2134_low_11
Description: NF2134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2134_low_11 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 19764682 - 19764889
Alignment:
| Q |
34 |
acatcagatgtcataggttatgttcatgaaattgaatattgtccggtaaaacaaggagtgtctaagaaactgcaagtgaagttgaccttgaaagacctta |
133 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19764682 |
acatcagatgtcataggctatgttcatgaaattggacattgtcaagtaaatcaaggagtgtctaagaaactgcaagtgaacttgaccttgaaagacctta |
19764781 |
T |
|
| Q |
134 |
ggtgaaatttaaaatattgttcaagctacattatttcttaccatatattgtggatatcactaaatattttgtaaatgtgtttagtgacatatctttaaac |
233 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19764782 |
ggtgaaatttacaatattgttcaagctacattgtttcttaccatatattgtagatatcactaaatattttgtaaatgtgtttagtgacatctctttaaac |
19764881 |
T |
|
| Q |
234 |
tgcactct |
241 |
Q |
| |
|
|||||||| |
|
|
| T |
19764882 |
tgcactct |
19764889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 14556057 - 14556264
Alignment:
| Q |
34 |
acatcagatgtcataggttatgttcatgaaattgaatattgtccggtaaaacaaggagtgtctaagaaactgcaagtgaagttgaccttgaaagacctta |
133 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
14556057 |
acatcagatgtcataggctatgttcatgaaattggatattgtcaagtaaatcaaggagtgtctaagaaactgcaagtgaacttgaccttgaaagatatta |
14556156 |
T |
|
| Q |
134 |
ggtgaaatttaaaatattgttcaagctacattatttcttaccatatattgtggatatcactaaatattttgtaaatgtgtttagtgacatatctttaaac |
233 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
14556157 |
ggtgaaatttacaatattgttcaagctacattgtttcttaccatatattgtggatatcactaaatattttttaaatgtgtttagtgacatctctttaaac |
14556256 |
T |
|
| Q |
234 |
tgcactct |
241 |
Q |
| |
|
|||||||| |
|
|
| T |
14556257 |
tgcactct |
14556264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 16392012 - 16392210
Alignment:
| Q |
34 |
acatcagatgtcataggttatgttcatgaaattgaatattgtccggtaaaacaaggagtgtctaagaaactgcaagtgaagttgaccttgaaagacctta |
133 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
16392012 |
acatcagatgtcataggctatgttcatgaaattggatatcgtc---------aaggagtgtctaagaaacggcaagtgaacttgaccttgaaagacctta |
16392102 |
T |
|
| Q |
134 |
ggtgaaatttaaaatattgttcaagctacattatttcttaccatatattgtggatatcactaaatattttgtaaatgtgtttagtgacatatctttaaac |
233 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16392103 |
ggtgaaatttacaatattgttcaagctacattgtttcttaccatatattgtggatatcactaaatattttgtaaatgtgtttagtgacatatctttaaac |
16392202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 159182 - 159145
Alignment:
| Q |
39 |
agatgtcataggttatgttcatgaaattgaatattgtc |
76 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
159182 |
agatgtcatagggtatgttcatgaaattggatattgtc |
159145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 18079048 - 18079011
Alignment:
| Q |
39 |
agatgtcataggttatgttcatgaaattgaatattgtc |
76 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
18079048 |
agatgtcatagggtatgttcatgaaattggatattgtc |
18079011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University