View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2134_low_6 (Length: 256)

Name: NF2134_low_6
Description: NF2134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2134_low_6
NF2134_low_6
[»] chr3 (10 HSPs)
chr3 (35-256)||(8173023-8173244)
chr3 (23-149)||(35970431-35970559)
chr3 (93-149)||(270647-270703)
chr3 (11-46)||(8173244-8173279)
chr3 (97-176)||(35970409-35970488)
chr3 (88-154)||(50888533-50888599)
chr3 (39-80)||(26848420-26848461)
chr3 (97-149)||(1379973-1380024)
chr3 (116-148)||(25749744-25749776)
chr3 (86-134)||(30567726-30567774)
[»] chr2 (15 HSPs)
chr2 (23-155)||(1465735-1465869)
chr2 (25-158)||(11603230-11603359)
chr2 (89-158)||(11591309-11591378)
chr2 (89-158)||(11610742-11610811)
chr2 (89-154)||(12027608-12027673)
chr2 (99-154)||(9277523-9277578)
chr2 (65-149)||(27671295-27671381)
chr2 (30-80)||(13056660-13056710)
chr2 (97-151)||(18478909-18478963)
chr2 (70-124)||(15756248-15756304)
chr2 (41-82)||(24080368-24080409)
chr2 (90-123)||(44084861-44084894)
chr2 (25-77)||(11726422-11726474)
chr2 (95-147)||(24080357-24080409)
chr2 (65-185)||(40288145-40288265)
[»] chr4 (21 HSPs)
chr4 (39-149)||(31052986-31053098)
chr4 (48-152)||(55259904-55260009)
chr4 (23-149)||(45994729-45994856)
chr4 (63-159)||(32585780-32585878)
chr4 (15-179)||(31727967-31728131)
chr4 (39-154)||(17517389-17517506)
chr4 (11-64)||(2742128-2742181)
chr4 (101-154)||(32021623-32021676)
chr4 (90-150)||(10355238-10355298)
chr4 (39-128)||(37538094-37538185)
chr4 (118-154)||(54441180-54441216)
chr4 (25-80)||(31053046-31053101)
chr4 (114-159)||(9334320-9334365)
chr4 (48-136)||(23205583-23205674)
chr4 (98-155)||(30546476-30546533)
chr4 (23-80)||(40012007-40012064)
chr4 (49-147)||(46056608-46056708)
chr4 (123-159)||(9322359-9322395)
chr4 (123-159)||(9376838-9376874)
chr4 (48-80)||(37538093-37538125)
chr4 (116-180)||(55248653-55248717)
[»] chr6 (10 HSPs)
chr6 (68-177)||(26280920-26281031)
chr6 (23-146)||(8514086-8514211)
chr6 (26-128)||(2428028-2428131)
chr6 (97-132)||(6453034-6453069)
chr6 (49-109)||(24766034-24766096)
chr6 (52-109)||(3205702-3205759)
chr6 (117-154)||(24341494-24341531)
chr6 (97-149)||(2428030-2428082)
chr6 (90-154)||(3298195-3298259)
chr6 (90-154)||(3789814-3789878)
[»] chr7 (13 HSPs)
chr7 (37-149)||(44411130-44411246)
chr7 (19-156)||(23540176-23540315)
chr7 (39-142)||(18358802-18358907)
chr7 (23-156)||(30017404-30017539)
chr7 (93-178)||(8669138-8669224)
chr7 (28-80)||(28243158-28243210)
chr7 (15-176)||(30017382-30017545)
chr7 (95-155)||(31580902-31580962)
chr7 (39-154)||(18358786-18358903)
chr7 (23-80)||(45429320-45429377)
chr7 (23-155)||(21222796-21222927)
chr7 (109-158)||(35580729-35580778)
chr7 (88-152)||(28243155-28243219)
[»] chr5 (12 HSPs)
chr5 (23-154)||(42347651-42347779)
chr5 (89-149)||(14717334-14717394)
chr5 (11-149)||(19117207-19117350)
chr5 (30-87)||(11649070-11649127)
chr5 (54-179)||(32891978-32892105)
chr5 (25-80)||(14717342-14717397)
chr5 (100-154)||(19117284-19117338)
chr5 (39-85)||(41018291-41018337)
chr5 (37-159)||(40634092-40634216)
chr5 (29-128)||(463490-463590)
chr5 (26-78)||(15191054-15191106)
chr5 (23-83)||(15349071-15349131)
[»] chr1 (8 HSPs)
chr1 (49-155)||(43859072-43859179)
chr1 (30-181)||(35120060-35120217)
chr1 (88-159)||(51587368-51587439)
chr1 (23-129)||(28016578-28016686)
chr1 (97-153)||(42523272-42523328)
chr1 (23-152)||(52066801-52066931)
chr1 (17-145)||(47210041-47210171)
chr1 (88-146)||(40614157-40614215)
[»] chr8 (8 HSPs)
chr8 (97-181)||(10172475-10172559)
chr8 (43-108)||(25502296-25502363)
chr8 (48-124)||(24889494-24889572)
chr8 (72-180)||(32185161-32185271)
chr8 (23-124)||(10172429-10172532)
chr8 (30-128)||(1205533-1205634)
chr8 (97-153)||(40957195-40957251)
chr8 (92-152)||(42109617-42109677)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 8173244 - 8173023
Alignment:
Q  35 ttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaacttgtgtttttatattcattaattaacgtgacaacacatcattagatac 134  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  8173244 ttatacatgcatccagtgatgtgttgccatatcaattaatgaatataacaactcgtgtttttatattcattaattaacgtgacaacatatcattagatac 8173145  T
Q  135 atatgtaaaataattgtacactaacggagtgtattaattaaattcttataatagcttaatttctcatgtactattagtgtaaattttttgcatgattagc 234  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  8173144 atatgtaaaataattgtacactaacggagggtattaattaaattcttataatagcttaatttctcatgtactattagtgtaatttttttacatgattagc 8173045  T
Q  235 acatcacaatcaattatatgta 256  Q
    ||||||||||||||||||||||    
T  8173044 acatcacaatcaattatatgta 8173023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 35970431 - 35970559
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaac 120  Q
    ||||| ||||| ||| |||||||| |||| |||||||| ||  ||||||||||||||| ||  ||  |||||||| ||||| ||||||| ||||||||||    
T  35970431 tgtatgattattttacacatgcattcaatcatgtgttgtcacgtcaattaatgaatatgacggcttatgtgttttcatatttattaattgacgtgacaac 35970530  T
Q  121 acatcattagatacatatgtaaaataatt 149  Q
    | |||||| ||| | | || |||||||||    
T  35970531 atatcattggatgcgtgtgcaaaataatt 35970559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 270647 - 270703
Alignment:
Q  93 ttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataatt 149  Q
    ||||||||||||||||| |||| ||||||||| ||||| ||||| ||||||||||||    
T  270647 ttttatattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 270703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 8173279 - 8173244
Alignment:
Q  11 atattctgtcactgtataattatcttatacatgcat 46  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8173279 atattatgtcactgtataattatcttatacatgcat 8173244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 35970488 - 35970409
Alignment:
Q  97 atattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacactaacggagtgtattaattaaa 176  Q
    ||||||||||||| |||||||||||||| |||  || ||| |||||||||||  |||||| || |||| || ||||||||    
T  35970488 atattcattaattgacgtgacaacacatgattgaatgcatgtgtaaaataatcatacactcacagagtatactaattaaa 35970409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 50888599 - 50888533
Alignment:
Q  88 tgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtaca 154  Q
    |||||||| ||||||||||||| ||||   || |||||||| ||||||| |||||||||||| ||||    
T  50888599 tgtgttttcatattcattaattgacgttgtaagacatcatttgatacatgtgtaaaataattttaca 50888533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 26848420 - 26848461
Alignment:
Q  39 acatgcatccaatgatgtgttgccatatcaattaatgaatat 80  Q
    ||||||||||||||||||||||  | ||||||||||||||||    
T  26848420 acatgcatccaatgatgtgttgaaacatcaattaatgaatat 26848461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 1380024 - 1379973
Alignment:
Q  97 atattcattaattaacgtgacaacacatcattagatacatatgtaaaataatt 149  Q
    ||||||||||||| ||||||||| |||||||| ||||| | ||||||||||||    
T  1380024 atattcattaattgacgtgacaa-acatcattggatacttgtgtaaaataatt 1379973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 25749744 - 25749776
Alignment:
Q  116 acaacacatcattagatacatatgtaaaataat 148  Q
    |||||||||||||||||||||||||||| ||||    
T  25749744 acaacacatcattagatacatatgtaaattaat 25749776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 30567774 - 30567726
Alignment:
Q  86 cttgtgtttttatattcattaattaacgtgacaacacatcattagatac 134  Q
    |||||||||| ||||| ||||| |||  |||||||||||||||||||||    
T  30567774 cttgtgttttcatatttattaactaatatgacaacacatcattagatac 30567726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 1465869 - 1465735
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaac 120  Q
    |||| |||||| ||| ||||||||||||||||||||| ||| |||| || || ||||| ||||||  |||||||| ||||| ||||||| ||||||||||    
T  1465869 tgtacaattattttacacatgcatccaatgatgtgtttccacatcatttgatcaatatgacaactcgtgtgttttcatatttattaattgacgtgacaac 1465770  T
Q  121 acatcattagatacatatgtaaaataattgtacac 155  Q
    |||||||| ||| ||| |||||||||| |||||||    
T  1465769 acatcattggatgcatgtgtaaaataactgtacac 1465735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 11603359 - 11603230
Alignment:
Q  25 tataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaacttgtgtttttatattcattaattaacgtgacaacacat 124  Q
    ||||||||| |||  |||||||| |||||||||||| || | |||||| ||||||| | |    ||||||| ||||||||||||| ||||||||||||||    
T  11603359 tataattattttaatcatgcatctaatgatgtgttgtcacaccaattagtgaatatgaaa----gtgttttcatattcattaattgacgtgacaacacat 11603264  T
Q  125 cattagatacatatgtaaaataattgtacactaa 158  Q
    | ||||||  || ||||||| ||||| |||||||    
T  11603263 cgttagatttatgtgtaaaacaattgaacactaa 11603230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 11591378 - 11591309
Alignment:
Q  89 gtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacactaa 158  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||  || ||||||| ||||| |||||||    
T  11591378 gtgttttcatattcattaattgacgtgacaacacatcgttagatttatgtgtaaaacaattgaacactaa 11591309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 11610811 - 11610742
Alignment:
Q  89 gtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacactaa 158  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||  || | ||||| ||||| |||||||    
T  11610811 gtgtttttatattcattaattaacgtgacaacacatcgttaaatttatgtttaaaacaattgaacactaa 11610742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 12027608 - 12027673
Alignment:
Q  89 gtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtaca 154  Q
    ||||||||||||| ||||||||| |||| ||||||| |||| || ||| |||||||||||| ||||    
T  12027608 gtgtttttatatttattaattaaagtgaaaacacattattatatgcatgtgtaaaataattataca 12027673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 9277578 - 9277523
Alignment:
Q  99 attcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtaca 154  Q
    ||||||||||| |||||||| ||||| |||||||  ||||||||||||||| ||||    
T  9277578 attcattaattgacgtgacaccacattattagatgaatatgtaaaataattttaca 9277523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 27671381 - 27671295
Alignment:
Q  65 atcaattaatgaatataaca--acttgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataatt 149  Q
    |||||||||||||||| | |  || || ||| ||||||||||||||| | |||||||||||| || ||||| || ||||||||||||    
T  27671381 atcaattaatgaatatgaaagcacatgagttattatattcattaatttatgtgacaacacattatcagataaatgtgtaaaataatt 27671295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 13056710 - 13056660
Alignment:
Q  30 ttatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatat 80  Q
    |||| ||| |||||||| |||||||||||||||| |||||| |||||||||    
T  13056710 ttattttacacatgcattcaatgatgtgttgccacatcaatgaatgaatat 13056660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 18478963 - 18478909
Alignment:
Q  97 atattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgt 151  Q
    ||||||||||||| ||||||||||  ||||| ||||| || ||||||||||||||    
T  18478963 atattcattaattgacgtgacaacctatcatcagatatatgtgtaaaataattgt 18478909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 15756304 - 15756248
Alignment:
Q  70 ttaatgaatataacaactt--gtgtttttatattcattaattaacgtgacaacacat 124  Q
    ||||||||||| | |||||  ||||||| ||||||||||||| ||||||||||||||    
T  15756304 ttaatgaatatgagaacttatgtgttttcatattcattaattgacgtgacaacacat 15756248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 24080368 - 24080409
Alignment:
Q  41 atgcatccaatgatgtgttgccatatcaattaatgaatataa 82  Q
    |||||||||||||||||||| ||| |||||||||| ||||||    
T  24080368 atgcatccaatgatgtgttgtcatctcaattaatggatataa 24080409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 44084861 - 44084894
Alignment:
Q  90 tgtttttatattcattaattaacgtgacaacaca 123  Q
    |||||||||||||||||||| |||||||||||||    
T  44084861 tgtttttatattcattaattgacgtgacaacaca 44084894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 11726422 - 11726474
Alignment:
Q  25 tataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaa 77  Q
    ||||||||| |||| |||||||  |||||||||||| || |||||||||||||    
T  11726422 tataattattttatccatgcatttaatgatgtgttgtcacatcaattaatgaa 11726474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 24080409 - 24080357
Alignment:
Q  95 ttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataa 147  Q
    |||||| |||||||| |  ||||||||||||||| ||| ||||||||||||||    
T  24080409 ttatatccattaattgagatgacaacacatcattggatgcatatgtaaaataa 24080357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 40288145 - 40288265
Alignment:
Q  65 atcaattaatgaatataacaacttgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacactaacggagt 164  Q
    |||||||||||||||||| || |  | || ||||||| ||||||| ||||||||| | || |||| ||  || ||||||||||||||| | ||||  | |    
T  40288145 atcaattaatgaatataataaatcttattcttatatttattaattgacgtgacaatatattattaaatgtatgtgtaaaataattgtatattaacaaaat 40288244  T
Q  165 gtattaattaaattcttataa 185  Q
     || | |||||||||||||||    
T  40288245 atactgattaaattcttataa 40288265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 31052986 - 31053098
Alignment:
Q  39 acatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaacacatcattagatacat 136  Q
    |||||||||||||| |||||||| | ||| |||||||||||| ||||||  |||||||| ||||||||||||| ||| |||||||||||||| ||| |||    
T  31052986 acatgcatccaatgttgtgttgctacatcgattaatgaatatgacaactcgtgtgttttcatattcattaattgacgcgacaacacatcattggatgcat 31053085  T
Q  137 atgtaaaataatt 149  Q
     ||||||||||||    
T  31053086 gtgtaaaataatt 31053098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 55259904 - 55260009
Alignment:
Q  48 caatgatgtgttgccatatcaattaatgaatataacaa-cttgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaata 146  Q
    ||||||| | ||| || |||||||||||||||| | || | |||||||| |||||||| |||| || |||||||||||||||||||||||  ||||||||    
T  55259904 caatgatatattgtcacatcaattaatgaatatgataaacatgtgttttcatattcatcaattgacatgacaacacatcattagatacatgcgtaaaata 55260003  T
Q  147 attgta 152  Q
    ||||||    
T  55260004 attgta 55260009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 45994729 - 45994856
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaacttgtgtt-tttatattcattaattaacgtgacaaca 121  Q
    ||||||||||| ||||||||||||| || ||||||||| ||  | ||||||||||| | | |||| ||||| || | ||||||||||| |||||||||||    
T  45994729 tgtataattattttatacatgcatcaaacgatgtgttgtcacgtgaattaatgaatgtgataactcgtgttcttcaaattcattaattcacgtgacaaca 45994828  T
Q  122 catcattagatacatatgtaaaataatt 149  Q
    ||| |||  ||| || ||||||||||||    
T  45994829 cattatttaatatatgtgtaaaataatt 45994856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 32585878 - 32585780
Alignment:
Q  63 atatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacactaac 159  Q
    |||||||||| |||||||| |||||  | |||||||||||| ||||||| || |||||||||||||||  ||| | ||||||||||||| |||| ||||    
T  32585878 atatcaattattgaatatagcaactcatatgtttttatattaattaattgacatgacaacacatcatttaatagacatgtaaaataattatacattaac 32585780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 31728131 - 31727967
Alignment:
Q  15 tctgtcactgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaac 112  Q
    ||||||| |||| |||||| ||||||||||||||||||||||  || || |||||| |||||||   ||||||   ||||||| ||||||||||||| |     
T  31728131 tctgtcagtgtacaattatattatacatgcatccaatgatgtaatgtcacatcaatgaatgaatgcgacaactcaagtgttttcatattcattaattgat 31728032  T
Q  113 gtgacaacacatcattagatacatatgtaaaataattgtacactaacggagtgtattaattaaattc 179  Q
    ||| ||||||  |||| |||  || ||||||||||||  |||||  | || | ||||||||||||||    
T  31728031 gtggcaacac--catttgatgtatgtgtaaaataattaaacactggcagaatatattaattaaattc 31727967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 17517389 - 17517506
Alignment:
Q  39 acatgcatccaatgatgtgttgccatatcaattaatgaatataacaacttgt--gtttttatattcattaattaacgtgacaacacatcattagatacat 136  Q
    |||| |||| ||||||||||||| | |||||||||| ||||| | ||| | |  ||| | |||||||||||||| ||||| |||| |||| | |||||||    
T  17517389 acattcatcaaatgatgtgttgctacatcaattaataaatatgaaaacatataagttgtgatattcattaattaccgtgataacatatcaatggatacat 17517488  T
Q  137 atgtaaaataattgtaca 154  Q
     | |||||||||||||||    
T  17517489 gtataaaataattgtaca 17517506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 2742128 - 2742181
Alignment:
Q  11 atattctgtcactgtataattatcttatacatgcatccaatgatgtgttgccat 64  Q
    ||||||||||| |||| |||||| ||| |||| |||||||||||||||||||||    
T  2742128 atattctgtcagtgtacaattattttacacatacatccaatgatgtgttgccat 2742181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 32021623 - 32021676
Alignment:
Q  101 tcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtaca 154  Q
    ||||||||| || | |||||||||||||| |||||||||||||||| |||||||    
T  32021623 tcattaattgacttaacaacacatcattaaatacatatgtaaaatatttgtaca 32021676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 10355298 - 10355238
Alignment:
Q  90 tgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattg 150  Q
    |||||||||||||||||||| || |||||| |||| |||  || |||||||||||||||||    
T  10355298 tgtttttatattcattaattgacatgacaaaacatgattgaatgcatatgtaaaataattg 10355238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 37538185 - 37538094
Alignment:
Q  39 acatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaacacatcatt 128  Q
    |||||||| ||| |||||||||| | ||||||||||||||   ||||||  | |||||| ||||||||||||| | ||| ||||||||||||    
T  37538185 acatgcattcaacgatgtgttgcgacatcaattaatgaatgcgacaactcatatgttttcatattcattaattgatgtggcaacacatcatt 37538094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 54441216 - 54441180
Alignment:
Q  118 aacacatcattagatacatatgtaaaataattgtaca 154  Q
    ||||||||||||||| |||||||||||||||||||||    
T  54441216 aacacatcattagatgcatatgtaaaataattgtaca 54441180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 31053101 - 31053046
Alignment:
Q  25 tataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatat 80  Q
    ||||||||| ||| |||||||||||||||||||||| |   |||||||||||||||    
T  31053101 tataattattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatat 31053046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 9334365 - 9334320
Alignment:
Q  114 tgacaacacatcattagatacatatgtaaaataattgtacactaac 159  Q
    |||||| | |||| |||||| |||||||||||||||||||||||||    
T  9334365 tgacaatatatcagtagatatatatgtaaaataattgtacactaac 9334320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 23205674 - 23205583
Alignment:
Q  48 caatgatgtgttgccatatcaattaatgaatataacaact---tgtgtttttatattcattaattaacgtgacaacacatcattagatacat 136  Q
    ||||||||||||   |||||||||||| ||||| ||||||   | |||||| ||| | ||||||| |||||| ||||||| |||||||||||    
T  23205674 caatgatgtgttagtatatcaattaataaatatgacaactatatatgttttcataataattaattgacgtgataacacattattagatacat 23205583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 30546476 - 30546533
Alignment:
Q  98 tattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacac 155  Q
    |||||| ||||||||||||||||| ||| || ||| ||| |||||||||| |||||||    
T  30546476 tattcactaattaacgtgacaacatatcgttggatgcatgtgtaaaataaatgtacac 30546533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 40012064 - 40012007
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatat 80  Q
    |||| |||||| ||| |||||||  |||||||||||| |||| |||||||||||||||    
T  40012064 tgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatat 40012007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 46056708 - 46056608
Alignment:
Q  49 aatgatgtgttgccatatcaattaatgaatataacaacttgtgttttt--atattcattaattaacgtgacaacacatcattagatacatatgtaaaata 146  Q
    |||||||||||| || |  ||||||| |||||||||| || | | |||  ||||||||||||| ||| ||||||||||||||| || ||| | |||||||    
T  46056708 aatgatgtgttgtcacacgaattaataaatataacaatttatatattttcatattcattaattgacgcgacaacacatcattaaatgcatgtataaaata 46056609  T
Q  147 a 147  Q
    |    
T  46056608 a 46056608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 9322395 - 9322359
Alignment:
Q  123 atcattagatacatatgtaaaataattgtacactaac 159  Q
    |||| |||||| |||||||||||||||||||||||||    
T  9322395 atcagtagatatatatgtaaaataattgtacactaac 9322359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 9376874 - 9376838
Alignment:
Q  123 atcattagatacatatgtaaaataattgtacactaac 159  Q
    |||| |||||| |||||||||||||||||||||||||    
T  9376874 atcagtagatatatatgtaaaataattgtacactaac 9376838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 37538093 - 37538125
Alignment:
Q  48 caatgatgtgttgccatatcaattaatgaatat 80  Q
    |||||||||||||||| ||||||||||||||||    
T  37538093 caatgatgtgttgccacatcaattaatgaatat 37538125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 55248717 - 55248653
Alignment:
Q  116 acaacacatcattagatacatatgtaaaataattgtacactaacggagtgtattaattaaattct 180  Q
    |||||||||||||| ||| |||| |||||||||| |||||| |||| || ||  |||||||||||    
T  55248717 acaacacatcattaaataaatatttaaaataattttacactgacggtgtatacaaattaaattct 55248653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 26280920 - 26281031
Alignment:
Q  68 aattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacactaacggagtg 165  Q
    ||||||||||||||||||||  | |||||| |||||||| ||||||| | |||||||||||||  |||||| |||||||||||| ||||||||| || |     
T  26280920 aattaatgaatataacaactcatatgttttcatattcatcaattaacatcacaacacatcatttaatacatgtgtaaaataattatacactaacagacta 26281019  T
Q  166 tattaattaaat 177  Q
    || |||||||||    
T  26281020 tactaattaaat 26281031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 8514211 - 8514086
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaa--cttgtgtttttatattcattaattaacgtgacaac 120  Q
    ||||||||||| ||| |||| ||| ||||||||| ||| || |||||||||| ||||| ||||  ||| ||||||||| |||||||||  || |||||||    
T  8514211 tgtataattattttacacatacatgcaatgatgtattgtcacatcaattaataaatatgacaactcttatgtttttatcttcattaatcgacatgacaac 8514112  T
Q  121 acatcattagatacatatgtaaaata 146  Q
    || ||||| ||| ||| |||||||||    
T  8514111 acttcattggatccatgtgtaaaata 8514086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 2428028 - 2428131
Alignment:
Q  26 ataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact-tgtgtttttatattcattaattaacgtgacaacacat 124  Q
    |||||||| ||| |||||||||  ||||||||||  || |||||||||||||||| |||| |  ||||||| ||||||||||||| | || ||||||| |    
T  2428028 ataattattttacacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaagtgttttcatattcattaattgaagtcacaacacgt 2428127  T
Q  125 catt 128  Q
    ||||    
T  2428128 catt 2428131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 6453034 - 6453069
Alignment:
Q  97 atattcattaattaacgtgacaacacatcattagat 132  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6453034 atattcattaattgacgtgacaacacatcattagat 6453069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 24766034 - 24766096
Alignment:
Q  49 aatgatgtgttgccatatcaattaatgaatataacaa--cttgtgtttttatattcattaatt 109  Q
    ||||||||||||||| |||||||||||||||| ||||  | |||||||| ||||| |||||||    
T  24766034 aatgatgtgttgccacatcaattaatgaatatgacaacgcatgtgttttcatatttattaatt 24766096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 3205759 - 3205702
Alignment:
Q  52 gatgtgttgccatatcaattaatgaatataacaacttgtgtttttatattcattaatt 109  Q
    ||||||||| || | |||||||||||||| |||||| |||||||  ||||||||||||    
T  3205759 gatgtgttggcacaccaattaatgaatatgacaactcgtgttttcttattcattaatt 3205702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 24341494 - 24341531
Alignment:
Q  117 caacacatcattagatacatatgtaaaataattgtaca 154  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  24341494 caacatatcattagatgcatatgtaaaataattgtaca 24341531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 2428082 - 2428030
Alignment:
Q  97 atattcattaattaacgtgacaacacatcattagatacatatgtaaaataatt 149  Q
    ||||||||||||| | |||| |||||||||| |||| ||| ||||||||||||    
T  2428082 atattcattaattgatgtgataacacatcataagatgcatgtgtaaaataatt 2428030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 3298195 - 3298259
Alignment:
Q  90 tgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtaca 154  Q
    ||||||||||||||||||||||||| | ||||| |||||| || |||   |||||||||| ||||    
T  3298195 tgtttttatattcattaattaacgttataacacgtcattaaatgcattcataaaataattataca 3298259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 3789814 - 3789878
Alignment:
Q  90 tgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtaca 154  Q
    |||| ||||||||||||||| | ||||||| |  |||||| ||| ||||||||||||||| ||||    
T  3789814 tgttgttatattcattaattgatgtgacaatatttcattaaatatatatgtaaaataattttaca 3789878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 44411246 - 44411130
Alignment:
Q  37 atacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaacaca--tcattagat 132  Q
    |||||||||| |||| || || || || || |||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||  | |||||||    
T  44411246 atacatgcattcaataatatgatgtcacattaattaatgaatacaacaactcatgtgtttttatattcattaattagcgtgacaacacatgttattagat 44411147  T
Q  133 acatatgtaaaataatt 149  Q
     ||| ||||||||||||    
T  44411146 gcatgtgtaaaataatt 44411130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 23540315 - 23540176
Alignment:
Q  19 tcactgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtga 116  Q
    ||||||||||||||| ||| ||||  || |||||||| |||| || |||||||||| ||||  |||| |  | | |||| ||||||||||||  ||||||    
T  23540315 tcactgtataattattttacacataaattcaatgatgcgttgtcacatcaattaataaataagacaattcatatattttcatattcattaatagacgtga 23540216  T
Q  117 caacacatcattagatacatatgtaaaataattgtacact 156  Q
     ||||||||||||||||||| || ||||||||| ||||||    
T  23540215 taacacatcattagatacatgtgcaaaataattatacact 23540176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 18358802 - 18358907
Alignment:
Q  39 acatgcatccaatgatgtgttgccatatcaattaatgaatataacaa--cttgtgtttttatattcattaattaacgtgacaacacatcattagatacat 136  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| ||||  | |||||||| || |||||||||||| |||  ||||||||||| ||| |||    
T  18358802 acatgcatcaaatgatgtgttgtcatgtcaattaatgaatatgacaagtcatgtgttttcatgttcattaattaatgtggtaacacatcattggatgcat 18358901  T
Q  137 atgtaa 142  Q
     |||||    
T  18358902 gtgtaa 18358907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 30017404 - 30017539
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaac 120  Q
    ||||||||||| ||| | ||| ||||||||   ||||||||  |||| ||||||||||  || ||  ||| |||| ||||||||||||| ||||||||||    
T  30017404 tgtataattattttacatatgtatccaatgcaatgttgccacgtcaactaatgaatatgtcagctcatgtattttgatattcattaattgacgtgacaac 30017503  T
Q  121 acatcattagatacatatgtaaaataattgtacact 156  Q
     |||| || ||| ||| |||||||||||||||||||    
T  30017504 gcatcgttggatgcatgtgtaaaataattgtacact 30017539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 8669138 - 8669224
Alignment:
Q  93 ttttatattcattaattaacgtgacaacacatcatt-agatacatatgtaaaataattgtacactaacggagtgtattaattaaatt 178  Q
    ||||||||| || |||| ||||||||| | |||||| ||||||||||||||||||| ||||||||||   ||| |||||||||||||    
T  8669138 ttttatatttatcaattgacgtgacaatatatcattcagatacatatgtaaaataagtgtacactaataaagtatattaattaaatt 8669224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 28243158 - 28243210
Alignment:
Q  28 aattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatat 80  Q
    |||||| ||| ||| |||||||||||||||||| |||||||||||||||||||    
T  28243158 aattattttaaacacgcatccaatgatgtgttgtcatatcaattaatgaatat 28243210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 30017545 - 30017382
Alignment:
Q  15 tctgtcactgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaa--cttgtgtttttatattcattaattaac 112  Q
    ||||||| |||| |||||| ||| |||||||||||| |||| |||| ||  ||||||||||||||| | ||  | || | |   |||||||||| || ||    
T  30017545 tctgtcagtgtacaattattttacacatgcatccaacgatgcgttgtcacgtcaattaatgaatatcaaaatacatgagctgacatattcattagttgac 30017446  T
Q  113 gtgacaacacatcattagatacatatgtaaaataattgtacactaacggagtgtattaattaaa 176  Q
    ||| |||||   |||| |||||||||||||||||||| |||| |||| |||| || ||||||||    
T  30017445 gtggcaacattgcattggatacatatgtaaaataattatacattaacagagtatactaattaaa 30017382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 31580962 - 31580902
Alignment:
Q  95 ttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacac 155  Q
    |||||||  |||||| ||||| ||||||||||||||||| || ||||||||||||||||||    
T  31580962 ttatattatttaattgacgtggcaacacatcattagatatatgtgtaaaataattgtacac 31580902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 18358903 - 18358786
Alignment:
Q  39 acatgcatccaatgatgtgttgccatatcaattaatgaatataacaacttgtg--tttttatattcattaattaacgtgacaacacatcattagatacat 136  Q
    ||||||||||||||||||||| ||| || |||||||||| || | |||   ||  || | ||||||||||||| || ||||||||||||||| ||| |||    
T  18358903 acatgcatccaatgatgtgttaccacattaattaatgaacatgaaaacacatgacttgtcatattcattaattgacatgacaacacatcatttgatgcat 18358804  T
Q  137 atgtaaaataattgtaca 154  Q
     || |||||||| |||||    
T  18358803 gtgcaaaataatggtaca 18358786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 45429377 - 45429320
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatat 80  Q
    |||||| |||| ||| ||||||||| |||||| ||||||||| |||||||||||||||    
T  45429377 tgtatatttattttacacatgcatcaaatgatttgttgccatgtcaattaatgaatat 45429320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 21222796 - 21222927
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaacttgt--gtttttatattcattaattaacgtgacaac 120  Q
    |||| |||||||||| |||| ||| || |||||| ||   || ||||||||| ||||||| ||| |||  ||| | ||||||||||||| | ||| ||||    
T  21222796 tgtagaattatcttacacatacattcagtgatgtatt---atgtcaattaataaatataaaaacatgtaagttgtcatattcattaattgatgtgtcaac 21222892  T
Q  121 acatcattagatacatatgtaaaataattgtacac 155  Q
    | ||||||||||  || |||||||| |||||||||    
T  21222893 atatcattagatttatgtgtaaaatgattgtacac 21222927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 35580729 - 35580778
Alignment:
Q  109 taacgtgacaacacatcattagatacatatgtaaaataattgtacactaa 158  Q
    |||||| |||| ||||||||||||  |||||||||||| |||||||||||    
T  35580729 taacgtaacaagacatcattagatgtatatgtaaaatacttgtacactaa 35580778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 28243219 - 28243155
Alignment:
Q  88 tgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgta 152  Q
    |||||||| ||||||||||||| |  ||||||||||||||| ||| | | | |||||||||||||    
T  28243219 tgtgttttcatattcattaattgatatgacaacacatcattggatgcgtgtttaaaataattgta 28243155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 42347651 - 42347779
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaac 120  Q
    ||||||||||| |||  ||||||||||||||||| ||  || |||||| ||||||||||||||||  | |||||| ||| ||||||||| |||||||||     
T  42347651 tgtataattattttacgcatgcatccaatgatgtattatcacatcaatgaatgaatataacaactcatttgttttcatactcattaattgacgtgacaat 42347750  T
Q  121 acatcattagatacatatgtaaaataattgtaca 154  Q
    | |||||||||     ||||||||||||||||||    
T  42347751 atatcattaga-----atgtaaaataattgtaca 42347779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 14717334 - 14717394
Alignment:
Q  89 gtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataatt 149  Q
    ||||||| ||||||||||||| | |||||||||||||||||||| ||| ||||||||||||    
T  14717334 gtgttttcatattcattaattgatgtgacaacacatcattagatgcatgtgtaaaataatt 14717394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 19117350 - 19117207
Alignment:
Q  11 atattctgtcactgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaa--cttgtgtttttatatt---catt 105  Q
    ||||| ||||| |||| |||||| ||| ||||||||||||| |||||||| || || |||||||||| || | ||  | ||||| ||||||||   || |    
T  19117350 atattatgtcaatgtacaattattttacacatgcatccaataatgtgttgtcacattaattaatgaacatgaaaattcatgtgtctttatattcaacaat 19117251  T
Q  106 aattaacgtgacaacacatcattagatacatatgtaaaataatt 149  Q
    |||| || |||||| |||||||||||||| | ||||||||||||    
T  19117250 aattgacatgacaatacatcattagatacttgtgtaaaataatt 19117207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 11649070 - 11649127
Alignment:
Q  30 ttatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact 87  Q
    |||| |||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||    
T  11649070 ttattttatacatgcatacaatgatgtgttgacatctcaattaatgaatatgacaact 11649127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 32892105 - 32891978
Alignment:
Q  54 tgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgt 151  Q
    |||||||||| |||||| ||||||||  ||||||  |||||||| |||||||||||||||   ||||| | || ||| ||| ||| |||||||||||| |    
T  32892105 tgtgttgccacatcaatcaatgaatacgacaactcatgtgttttcatattcattaattaatacgacaataaattattggatgcatgtgtaaaataattat 32892006  T
Q  152 acactaacggagtgtattaattaaattc 179  Q
     |||||   |||| ||||||||||||||    
T  32892005 ccactagaagagtatattaattaaattc 32891978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 14717397 - 14717342
Alignment:
Q  25 tataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatat 80  Q
    ||||||||| ||| ||||||||| |||||||||||| || ||||||||||||||||    
T  14717397 tataattattttacacatgcatctaatgatgtgttgtcacatcaattaatgaatat 14717342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 19117284 - 19117338
Alignment:
Q  100 ttcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtaca 154  Q
    |||||||||||| |||||||||||| ||| ||| ||| |||||||||||||||||    
T  19117284 ttcattaattaatgtgacaacacattattggatgcatgtgtaaaataattgtaca 19117338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 41018337 - 41018291
Alignment:
Q  39 acatgcatccaatgatgtgttgccatatcaattaatgaatataacaa 85  Q
    ||||||||| ||||||||||||||  |||||||||||||||| ||||    
T  41018337 acatgcatctaatgatgtgttgccccatcaattaatgaatatgacaa 41018291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 40634216 - 40634092
Alignment:
Q  37 atacatgcatccaatgatgtgttgccatatcaattaatgaatataacaacttgtgt--ttttatattcattaattaacgtgacaacacatcattagatac 134  Q
    ||||||| ||| ||| ||| || | ||||| |||||| |||||| || |||| |||  ||| |||||| ||||||||||| |||||| || || | ||      
T  40634216 atacatgtatcaaataatgcgtcgtcatattaattaaagaatatgaccacttatgtgatttcatattcgttaattaacgttacaacaaattatcaaatgt 40634117  T
Q  135 atatgtaaaataattgtacactaac 159  Q
    ||||||||||||||| |||||||||    
T  40634116 atatgtaaaataattatacactaac 40634092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 463490 - 463590
Alignment:
Q  29 attatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaacttgtgtttttatattca-ttaattaacgtgacaacacatcat 127  Q
    ||||| ||| |||||||||| ||||||| || ||| |||||| ||| ||||| |  |||  |||||||||||||| ||||||||  ||||||| ||||||    
T  463490 attattttaaacatgcatcccatgatgtattaccacatcaataaataaatatgatgactcatgtttttatattcacttaattaatatgacaactcatcat 463589  T
Q  128 t 128  Q
    |    
T  463590 t 463590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 15191054 - 15191106
Alignment:
Q  26 ataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaat 78  Q
    |||||||| ||||||||| ||  |||||||||||  |||||||||||||||||    
T  15191054 ataattattttatacatgtatttaatgatgtgttttcatatcaattaatgaat 15191106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 15349071 - 15349131
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataac 83  Q
    |||| |||||| ||| ||||||||||||| ||  ||||||| |||| ||||||||||||||    
T  15349071 tgtaaaattattttacacatgcatccaatcatacgttgccacatcatttaatgaatataac 15349131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 43859072 - 43859179
Alignment:
Q  49 aatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaata 146  Q
    ||||||||||||| |||||||||||||||||||||||||  ||| |||||||||| ||| ||| | ||| |||||||| |||| || ||| |||||| ||    
T  43859072 aatgatgtgttgctatatcaattaatgaatataacaactcgtgtatttttatatttattgattgatgtggcaacacat-attaaatgcatgtgtaaatta 43859170  T
Q  147 attgtacac 155  Q
    |||||||||    
T  43859171 attgtacac 43859179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 35120217 - 35120060
Alignment:
Q  30 ttatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtg----acaacaca 123  Q
    |||| ||| |||||||||||||||||| ||||||| ||||||||| ||||  ||||||  | |||||| ||||||||||||| | |||     |||||||    
T  35120217 ttattttacacatgcatccaatgatgtattgccatgtcaattaataaatacgacaactcgtatgttttcatattcattaattgatgtggcaagcaacaca 35120118  T
Q  124 tcattagatacatatgtaaaataattgtacactaacggagtgtattaattaaattctt 181  Q
     |||| |||   | ||||||||||||||||||||| ||  | || |||||||||||||    
T  35120117 ccatttgatctctgtgtaaaataattgtacactaatggtatatactaattaaattctt 35120060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 51587439 - 51587368
Alignment:
Q  88 tgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacactaac 159  Q
    |||||||| ||||||||||||| ||||  ||||||||  || ||| ||| ||||||||||||||||||||||    
T  51587439 tgtgttttcatattcattaattgacgtagcaacacattgtttgatgcatgtgtaaaataattgtacactaac 51587368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 28016578 - 28016686
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaac 120  Q
    |||| |||||| ||| |||| ||| ||||||||||||| ||| |||||||| |||||| ||| ||  | |||||| || |||||||||| | ||| ||||    
T  28016578 tgtacaattattttacacatacattcaatgatgtgttgtcatttcaattaacgaatatgacagctcatatgttttcatgttcattaattgatgtgtcaac 28016677  T
Q  121 acatcatta 129  Q
    |||||||||    
T  28016678 acatcatta 28016686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 42523328 - 42523272
Alignment:
Q  97 atattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtac 153  Q
    ||||||||||||| ||||||||| | |||||||||| ||||  ||||||||||||||    
T  42523328 atattcattaattgacgtgacaataaatcattagatgcatacataaaataattgtac 42523272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 52066801 - 52066931
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaa--cttgtgtttttatattcattaattaacgtgacaac 120  Q
    ||||| ||||| ||| ||||| ||  ||||| |||||| || ||||||||||| |||| ||||  ||||| |||| ||||||||||||| || ||||| |    
T  52066801 tgtatcattattttacacatgtataaaatgacgtgttgtcaaatcaattaatggatatgacaactcttgtattttcatattcattaattgacatgacagc 52066900  T
Q  121 acatcattagatacatatgtaaaataattgta 152  Q
    | || |||| ||| || |||||||||||||||    
T  52066901 atat-attaaatatatgtgtaaaataattgta 52066931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 47210171 - 47210041
Alignment:
Q  17 tgtcactgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaa--cttgtgtttttatattcattaattaacgt 114  Q
    |||||||||| || ||| ||| |||| |||| ||| || ||||| || || ||||||||||||| ||||  ||||| |||||||||| |||||   ||||    
T  47210171 tgtcactgtacaaatattttacacatacatctaataatatgttgtcacataaattaatgaatatgacaactcttgtatttttatatttattaaaagacgt 47210072  T
Q  115 gacaacacatcattagatacatatgtaaaat 145  Q
     | ||||||||||||||| ||| | ||||||    
T  47210071 cataacacatcattagatgcatgtataaaat 47210041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 40614157 - 40614215
Alignment:
Q  88 tgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaata 146  Q
    |||||||||||||||||||||| | || ||||||||| |||  |||||| |||||||||    
T  40614157 tgtgtttttatattcattaatttatgtaacaacacataattgaatacatgtgtaaaata 40614215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 10172475 - 10172559
Alignment:
Q  97 atattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacactaacggagtgtattaattaaattctt 181  Q
    ||||||| ||||| |||||||||| ||||||| ||| ||| ||||||||||||||||||  || ||| ||| |||||||| ||||    
T  10172475 atattcactaattgacgtgacaacgcatcatttgatgcatgtgtaaaataattgtacaccgacagagcgtactaattaaactctt 10172559  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 25502296 - 25502363
Alignment:
Q  43 gcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaat 108  Q
    |||| |||| |||||||| || |||||||||||||||||||||||  |||||||||||||| ||||||    
T  25502296 gcattcaataatgtgttgtcacatcaattaatgaatataacaacttatgtgtttttatattaattaat 25502363  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 24889494 - 24889572
Alignment:
Q  48 caatgatgtgttgccatatcaattaatgaatataacaa--cttgtgtttttatattcattaattaacgtgacaacacat 124  Q
    |||| ||||||| |||||||||||||| ||||||| ||  |||| ||| ||||||||||||||| ||||||||| ||||    
T  24889494 caataatgtgttcccatatcaattaattaatataaaaacgcttgagttgttatattcattaattgacgtgacaatacat 24889572  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 32185271 - 32185161
Alignment:
Q  72 aatgaatataacaact--tgtgtttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtacactaacggagtgtatt 169  Q
    ||||||||| ||||||  |||||||| ||||||||||||| ||  || || |||||||||||||||| | |||| ||||| |||  | || |||| ||||    
T  32185271 aatgaatatgacaactcatgtgttttcatattcattaattgacaagataatacatcattagatacatgtctaaagtaattatacgttgacagagtatatt 32185172  T
Q  170 aattaaattct 180  Q
    |||||||||||    
T  32185171 aattaaattct 32185161  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 10172532 - 10172429
Alignment:
Q  23 tgtataattatcttatacatgcatccaatgatgtgttgccatatcaattaatgaatataacaact--tgtgtttttatattcattaattaacgtgacaac 120  Q
    |||| |||||| ||| ||||||||| ||||||| |||| ||  ||||||| ||||||| ||||||  | |||||| | ||||||||||| |||| |||||    
T  10172532 tgtacaattattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatgacaactcatatgttttcacattcattaattgacgtaacaac 10172433  T
Q  121 acat 124  Q
    ||||    
T  10172432 acat 10172429  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 1205634 - 1205533
Alignment:
Q  30 ttatcttatacatgcatccaatgatgtgttgccatatcaattaa-tgaatataacaacttgtgttttt--atattcattaattaacgtgacaacacatca 126  Q
    |||| |||| |||||||||||| || ||||| ||||| |||||| ||||||| |||  || |||||||  ||||| ||||||||||||| ||||| ||||    
T  1205634 ttattttatgcatgcatccaattatttgttgtcatattaattaaatgaatatgacagtttatgttttttcatatttattaattaacgtggcaacatatca 1205535  T
Q  127 tt 128  Q
    ||    
T  1205534 tt 1205533  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 40957195 - 40957251
Alignment:
Q  97 atattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgtac 153  Q
    |||||||| |||| |||||||||| ||| ||| ||| ||||| ||||||||||||||    
T  40957195 atattcataaattgacgtgacaactcattattggatgcatatataaaataattgtac 40957251  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 42109617 - 42109677
Alignment:
Q  92 tttttatattcattaattaacgtgacaacacatcattagatacatatgtaaaataattgta 152  Q
    |||| ||||||||||||| |||| || |||||||| || || ||| |||||||||||||||    
T  42109617 ttttaatattcattaattgacgtaacgacacatcactaaatgcatgtgtaaaataattgta 42109677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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