View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2134_low_8 (Length: 254)

Name: NF2134_low_8
Description: NF2134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2134_low_8
NF2134_low_8
[»] chr5 (19 HSPs)
chr5 (1-242)||(12504493-12504732)
chr5 (107-202)||(25545211-25545304)
chr5 (141-198)||(27195277-27195334)
chr5 (134-202)||(36945658-36945726)
chr5 (139-202)||(3907677-3907740)
chr5 (104-202)||(41169443-41169541)
chr5 (206-242)||(5877456-5877492)
chr5 (206-242)||(22315066-22315102)
chr5 (206-242)||(22361191-22361227)
chr5 (206-242)||(29413615-29413651)
chr5 (119-202)||(40530026-40530107)
chr5 (104-202)||(42420070-42420168)
chr5 (141-206)||(31273062-31273127)
chr5 (125-198)||(40773132-40773205)
chr5 (121-193)||(32493314-32493386)
chr5 (206-242)||(42152057-42152093)
chr5 (205-242)||(12917988-12918025)
chr5 (119-176)||(43461964-43462021)
chr5 (123-183)||(35312015-35312074)
[»] chr4 (12 HSPs)
chr4 (102-202)||(21433859-21433959)
chr4 (103-202)||(2247567-2247665)
chr4 (205-242)||(30210522-30210559)
chr4 (206-242)||(7781565-7781601)
chr4 (168-203)||(2324810-2324845)
chr4 (104-183)||(41840581-41840660)
chr4 (119-206)||(52374966-52375053)
chr4 (104-198)||(15134624-15134718)
chr4 (104-182)||(32286304-32286382)
chr4 (119-176)||(16457923-16457980)
chr4 (119-176)||(33414006-33414063)
chr4 (104-176)||(21433952-21434024)
[»] chr3 (14 HSPs)
chr3 (134-201)||(45332562-45332629)
chr3 (104-202)||(37189197-37189295)
chr3 (104-202)||(14345139-14345237)
chr3 (104-202)||(36480695-36480793)
chr3 (145-202)||(40763397-40763454)
chr3 (206-242)||(32747607-32747643)
chr3 (134-202)||(40554091-40554159)
chr3 (134-201)||(31205423-31205490)
chr3 (123-201)||(35357324-35357402)
chr3 (119-202)||(19560682-19560765)
chr3 (111-205)||(48543377-48543471)
chr3 (119-176)||(11532514-11532571)
chr3 (110-183)||(33244683-33244756)
chr3 (145-202)||(37341276-37341333)
[»] chr2 (24 HSPs)
chr2 (107-198)||(1469730-1469821)
chr2 (119-202)||(25666801-25666884)
chr2 (145-201)||(9430191-9430247)
chr2 (134-178)||(16209393-16209437)
chr2 (206-242)||(16816285-16816321)
chr2 (206-242)||(16855442-16855478)
chr2 (206-242)||(21066874-21066910)
chr2 (206-242)||(21340887-21340923)
chr2 (146-202)||(42094233-42094289)
chr2 (145-203)||(12779530-12779588)
chr2 (145-202)||(4237279-4237336)
chr2 (104-176)||(12703460-12703532)
chr2 (134-182)||(41496077-41496125)
chr2 (134-202)||(44247591-44247659)
chr2 (139-198)||(3466410-3466469)
chr2 (119-202)||(42251216-42251299)
chr2 (119-201)||(42029396-42029478)
chr2 (119-177)||(44247541-44247599)
chr2 (205-242)||(2020393-2020430)
chr2 (145-202)||(15194564-15194621)
chr2 (149-202)||(16209428-16209481)
chr2 (129-202)||(17383773-17383846)
chr2 (119-176)||(18719734-18719791)
chr2 (134-202)||(18719784-18719851)
[»] chr6 (11 HSPs)
chr6 (104-176)||(1473603-1473675)
chr6 (121-208)||(4032992-4033079)
chr6 (119-202)||(24783919-24784002)
chr6 (119-202)||(6643318-6643401)
chr6 (104-205)||(479791-479891)
chr6 (104-205)||(4787767-4787868)
chr6 (145-202)||(7693670-7693727)
chr6 (139-202)||(12731577-12731640)
chr6 (119-199)||(4494397-4494477)
chr6 (104-161)||(4033086-4033143)
chr6 (166-202)||(26328211-26328247)
[»] chr1 (21 HSPs)
chr1 (139-202)||(23317962-23318025)
chr1 (119-202)||(2542705-2542788)
chr1 (119-202)||(31970123-31970206)
chr1 (107-206)||(27666984-27667083)
chr1 (119-202)||(49822581-49822664)
chr1 (119-205)||(40668979-40669065)
chr1 (120-202)||(45563119-45563201)
chr1 (145-202)||(731359-731416)
chr1 (206-242)||(23761310-23761346)
chr1 (206-242)||(26622699-26622735)
chr1 (206-242)||(32798952-32798988)
chr1 (206-242)||(41304477-41304513)
chr1 (104-202)||(34437651-34437748)
chr1 (153-202)||(18075217-18075266)
chr1 (141-202)||(38663704-38663765)
chr1 (206-242)||(1175831-1175867)
chr1 (141-205)||(45925133-45925197)
chr1 (141-183)||(32543766-32543808)
chr1 (149-202)||(7444334-7444387)
chr1 (145-202)||(45215380-45215437)
chr1 (123-199)||(49403528-49403604)
[»] chr7 (23 HSPs)
chr7 (119-202)||(2276280-2276363)
chr7 (126-177)||(2276355-2276406)
chr7 (140-205)||(7526142-7526207)
chr7 (205-242)||(15953717-15953754)
chr7 (205-242)||(19091022-19091059)
chr7 (206-242)||(1947791-1947827)
chr7 (134-202)||(12275756-12275824)
chr7 (206-242)||(33849658-33849694)
chr7 (146-198)||(316389-316441)
chr7 (206-242)||(15925392-15925428)
chr7 (126-202)||(26862923-26862999)
chr7 (104-176)||(26862992-26863064)
chr7 (145-200)||(33597015-33597068)
chr7 (145-200)||(10056652-10056707)
chr7 (139-206)||(36992872-36992939)
chr7 (126-164)||(46074146-46074184)
chr7 (149-202)||(640932-640985)
chr7 (104-193)||(3235547-3235636)
chr7 (141-202)||(18802893-18802954)
chr7 (103-184)||(40803214-40803295)
chr7 (141-202)||(45200503-45200564)
chr7 (149-202)||(48497688-48497741)
chr7 (139-199)||(32097478-32097538)
[»] chr8 (10 HSPs)
chr8 (103-184)||(36914877-36914958)
chr8 (123-202)||(34504384-34504463)
chr8 (104-202)||(17893305-17893403)
chr8 (145-202)||(40175923-40175980)
chr8 (145-205)||(38835050-38835110)
chr8 (104-202)||(4994208-4994304)
chr8 (139-203)||(2288651-2288715)
chr8 (145-205)||(21124979-21125039)
chr8 (168-205)||(27072865-27072902)
chr8 (126-198)||(2171056-2171128)
[»] scaffold0513 (1 HSPs)
scaffold0513 (206-242)||(11092-11128)
[»] scaffold0510 (1 HSPs)
scaffold0510 (206-242)||(7838-7874)
[»] scaffold0053 (2 HSPs)
scaffold0053 (206-242)||(66007-66043)
scaffold0053 (206-242)||(71676-71712)
[»] scaffold0137 (1 HSPs)
scaffold0137 (119-202)||(8234-8316)
[»] scaffold0060 (1 HSPs)
scaffold0060 (210-242)||(16319-16351)
[»] scaffold0003 (1 HSPs)
scaffold0003 (139-199)||(136344-136404)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 12504493 - 12504732
Alignment:
Q  1 ctttctcaattattcttattttctaagtagtactatttccattacagttaattataagcaaaaatacatatttttacctttagtaaaaagagaaaaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  12504493 ctttctcaattattcttattttctaagtagtactatttccattacagttaattataagcaaaaata--tatttttacctttagtaaaaagagaaaaagtt 12504590  T
Q  101 acaaacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttgg 200  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  12504591 acaaacacacatttcaatacatatttttcaacgcactatcattaattgattaaaattcacatgaattccaacaaatttatatgggaccaacataatttgg 12504690  T
Q  201 tgagatgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12504691 tgagatgataagtgctaggaagtgttaaattcatgatatatt 12504732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 25545211 - 25545304
Alignment:
Q  107 acacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||| || |||||||||| ||| ||||  |||| ||||||||||||||||||||   |||| |||||||||||||||| |||||||||||||    
T  25545211 acacattttaacacacatttttcaacacact--ctttgattggttaaaattcacatgagacccactaaatttatatgggaccgacatgatttggtg 25545304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 27195277 - 27195334
Alignment:
Q  141 tttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgattt 198  Q
    |||||||| |||||||||||||| ||||||||||||||||||||| || |||||||||    
T  27195277 tttaattgattaaaattcacatggattccaccaaatttatatgggtccgacatgattt 27195334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 36945726 - 36945658
Alignment:
Q  134 cactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||| ||||| ||||||||| ||||||||||| ||||||||||||||||| |||| | |||||||||||    
T  36945726 cactttctttgattggttaatattcacatgaaatccaccaaatttatatgagacctatatgatttggtg 36945658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 3907677 - 3907740
Alignment:
Q  139 tctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||| |||||||||||||||||||    ||||||||||||||||||||| |||||||||||||    
T  3907677 tctttgattggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtg 3907740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 41169541 - 41169443
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||| |||| || |||||||||| ||| |||| ||||| ||  |||||||||||||||   |||||||||||||||||||||   ||||||||||||    
T  41169541 aacacatattttaacacacatttttcaacacactctctttgatccgttaaaattcacatgtgatccaccaaatttatatgggactcgcatgatttggtg 41169443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 5877492 - 5877456
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  5877492 tgataagtgctaggaagtgttaaattcatgatatatt 5877456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 22315102 - 22315066
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  22315102 tgataagtgctaggaagtgttaaattcatgatatatt 22315066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 22361227 - 22361191
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  22361227 tgataagtgctaggaagtgttaaattcatgatatatt 22361191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 29413615 - 29413651
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  29413615 tgataagtgctaggaagtgttaaattcatgatatatt 29413651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 40530107 - 40530026
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||||||| ||||  |||||||| ||||||||||||| ||  ||||| ||||||||||  |||| |||||||||||||    
T  40530107 acacattttttaacacact--ctttaatttgttaaaattcacaggagatccactaaatttatattagacccacatgatttggtg 40530026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 42420168 - 42420070
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||  || ||||  |||| ||| |||| | ||| ||||||||||| ||||||||  |||| ||||||||||||||| | |||||||||||||    
T  42420168 aacacacattctaaaacacgcttttcaacacactctatttgattggttaaaactcacatgagatccatcaaatttatatgggatccacatgatttggtg 42420070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 31273062 - 31273127
Alignment:
Q  141 tttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgagat 206  Q
    |||||| |||||||||||||||||  |||||||||||||||| | | | |||||||||||| ||||    
T  31273062 tttaatcggttaaaattcacatgagatccaccaaatttatatagaatccacatgatttggtaagat 31273127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 40773132 - 40773205
Alignment:
Q  125 tttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgattt 198  Q
    |||| ||| |||||| ||| |||||| |||||||||||||  |||||||||| ||||||||||| |||| ||||    
T  40773132 ttttcaacacactattttttattggtcaaaattcacatgagatccaccaaatatatatgggacctacatcattt 40773205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 32493314 - 32493386
Alignment:
Q  121 acattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacat 193  Q
    ||||||| |||||| || ||||| ||||||||||||||| ||| || | || |||||||||||||||| ||||    
T  32493314 acattttataacgcgctttcttttattggttaaaattcatatggatcctactaaatttatatgggacccacat 32493386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 42152093 - 42152057
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    ||||||||| |||||||||||||||||||||||||||    
T  42152093 tgataagtgttaggaagtgttaaattcatgatatatt 42152057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 12917988 - 12918025
Alignment:
Q  205 atgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  12917988 atgataagtgctagaaagtgttaaattcatgatgtatt 12918025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 43461964 - 43462021
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaat 176  Q
    ||||||||| |||| |||| | |||||| |||||||||||||| || |||||||||||    
T  43461964 acacattttctaacacactctttttaatcggttaaaattcacacgagttccaccaaat 43462021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 35312074 - 35312015
Alignment:
Q  123 attttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatg 183  Q
    |||||| ||| |||||||||||||||||| | ||| |||||||||| | ||||||||||||    
T  35312074 atttttcaacacactatctttaattggtt-atatttacatgaattctatcaaatttatatg 35312015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 21433859 - 21433959
Alignment:
Q  102 caaacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggt 201  Q
    ||||||||||||| || |||||||||| ||| |||| ||||| ||||||||||||||||||||   |||||||||||||||| |||| ||||||||||||    
T  21433859 caaacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgagacccaccaaatttatatgagacccacatgatttggt 21433958  T
Q  202 g 202  Q
    |    
T  21433959 g 21433959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 2247567 - 2247665
Alignment:
Q  103 aaacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||| |||| || ||||| |||| ||| |||| |||||||||| |||||||||||| ||  |||| |||||||||||| |||| |||||||||||||    
T  2247567 aaacacatattttaacacacacttttcaacacactctctttaattgattaaaattcacacgagatcca-caaatttatatgcgacccacatgatttggtg 2247665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 30210522 - 30210559
Alignment:
Q  205 atgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  30210522 atgataagtgctacgaagtgttaaattcatgatatatt 30210559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 7781601 - 7781565
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7781601 tgataagtgctaggaagggttaaattcatgatatatt 7781565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 2324845 - 2324810
Alignment:
Q  168 ccaccaaatttatatgggaccaacatgatttggtga 203  Q
    ||||||||||||||||||||| ||||||||||||||    
T  2324845 ccaccaaatttatatgggacccacatgatttggtga 2324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 41840581 - 41840660
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatg 183  Q
    |||| |||||| || ||| |||||| ||| |||| ||||| |||| |||||||| |||||  ||||||||||||||||||    
T  41840581 aacatacattttaacacatatttttcaacacactctctttgattgattaaaatttacatgggttccaccaaatttatatg 41840660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 52375053 - 52374966
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgagat 206  Q
    |||||||||| ||  |||| | ||| ||||||||||||||||||    |||| |||||||||| |||||| |||| ||||||||||||    
T  52375053 acacatttttcaatacactctttttgattggttaaaattcacatttgatccatcaaatttatacgggacccacataatttggtgagat 52374966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 15134718 - 15134624
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgattt 198  Q
    ||||||||||| ||  |||| |||| ||| |||| ||| | |||||||||||||||||||     |||||||||||||||||||| | |||||||    
T  15134718 aacacacattttaacgcacacttttcaacacactgtctgtgattggttaaaattcacatgggactcaccaaatttatatgggacccaaatgattt 15134624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 32286382 - 32286304
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatat 182  Q
    ||||||| |||||| | | |||||| ||| |||| | ||| ||||||||||||||||||| || | |||||||||||||    
T  32286382 aacacacgtttcaacatatatttttcaacacactcttttttattggttaaaattcacatggatccaaccaaatttatat 32286304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 16457923 - 16457980
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaat 176  Q
    ||||||||| |||| |||| ||||| ||||||||||||||||||| || ||| |||||    
T  16457923 acacattttctaacacactctctttgattggttaaaattcacatggatcccatcaaat 16457980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 33414006 - 33414063
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaat 176  Q
    ||||| |||| ||| |||| ||||| ||||||||||||||||||| || |||||||||    
T  33414006 acacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaat 33414063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 21434024 - 21433952
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaat 176  Q
    ||||||||||| || | ||| |||| ||| |||| || || ||||||||||||||||||| || |||||||||    
T  21434024 aacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaat 21433952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 45332562 - 45332629
Alignment:
Q  134 cactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggt 201  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||    
T  45332562 cactttctttaattggttaaaattcacatggaatccaccaaatttatatgggacccacatgatttggt 45332629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 37189295 - 37189197
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||| |||| ||||||||||||  ||| ||||| ||||||||||||||||||||||||||| |||| |||| ||| |  |||||||||||||    
T  37189295 aacacacattttaatatacattttttaacagactctctttgattggttaaaattcacatgaattccactaaatctatacgggtctcacatgatttggtg 37189197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 14345139 - 14345237
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||| |||| || ||| |||||| ||| |||| ||||| |||||||||||| |||||||   ||||||||||||||||||||| |||||||||||||    
T  14345139 aacacatattttaacacatatttttcaacacactttctttgattggttaaaatccacatgagacccaccaaatttatatgggacccacatgatttggtg 14345237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 36480695 - 36480793
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||| || ||||  |||  ||| |||| ||||| |||||||||||||||||||    ||| ||||||||||||||||| |||||||||||||    
T  36480695 aacacacattttaacacaccctttccaacacactctctttgattggttaaaattcacatgggacccaacaaatttatatgggacccacatgatttggtg 36480793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 40763397 - 40763454
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||||||||||||  |||| ||||||||||||||| | |||||||||||||    
T  40763397 attggttaaaattcacatgagatccatcaaatttatatgggatccacatgatttggtg 40763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 32747643 - 32747607
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  32747643 tgataagtgctaggaagtgttaaattcatgatatatt 32747607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 40554159 - 40554091
Alignment:
Q  134 cactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| |  |||||||||||||    
T  40554159 cactctctttgattggttaaaactcacatgagttccatcaaatttatatgggtctcacatgatttggtg 40554091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 31205490 - 31205423
Alignment:
Q  134 cactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggt 201  Q
    |||| ||||| |||||| |||||||||||||   ||||||| ||||||||||||| ||||||||||||    
T  31205490 cactctctttgattggtcaaaattcacatgagacccaccaattttatatgggacccacatgatttggt 31205423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 35357324 - 35357402
Alignment:
Q  123 attttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggt 201  Q
    |||||| ||| |||| ||||| ||||||||||| |||||||    ||||||||||||||||||||  ||||||||||||    
T  35357324 atttttcaacacactctctttgattggttaaaactcacatgtgaaccaccaaatttatatgggacttacatgatttggt 35357402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 19560765 - 19560682
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||| ||| |||| ||||| |||||||||||  |||| |   ||||| |||||| ||||||||| |||||||||||||    
T  19560765 acacatttttcaacacactctctttgattggttaaaaagcacaagggatccactaaatttgtatgggacccacatgatttggtg 19560682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 48543377 - 48543471
Alignment:
Q  111 atttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgaga 205  Q
    |||| |||||||| ||||||||||| | |||||||||| |||||||| |||||    |||  |||||||||||||| | || ||||||| |||||    
T  48543377 attttaatacacactttttaacgcattttctttaattgattaaaatttacatgggacccattaaatttatatgggatccacgtgatttgatgaga 48543471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 11532571 - 11532514
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaat 176  Q
    ||||| ||| |||| |||| ||||| |||||||||||||||||||  |||||||||||    
T  11532571 acacactttctaacacactctctttgattggttaaaattcacatgggttccaccaaat 11532514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 33244683 - 33244756
Alignment:
Q  110 catttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatg 183  Q
    ||||| |||||| |||||| ||| || ||| ||| ||||||||||||||| |||| |  |||||||||||||||    
T  33244683 cattttaatacatatttttcaacacattattttttattggttaaaattcaaatgagtctcaccaaatttatatg 33244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 37341333 - 37341276
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||||||||||| |  |||  ||||||||||| |||| |||||||||||||    
T  37341333 attggttaaaattcacatgtaacccattaaatttatatgagacccacatgatttggtg 37341276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 1469730 - 1469821
Alignment:
Q  107 acacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgattt 198  Q
    |||||||| || ||| |||||| ||| |||| | ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||    
T  1469730 acacattttaacacatatttttcaacacactctatttaattggttaaaattcacatggaatccaccaaatttatatgggacccacatgattt 1469821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 25666801 - 25666884
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||| ||| |||| | ||| |||| |||||||||||||||   ||||||||||||||||| ||| |||||||||||||    
T  25666801 acacatttttcaacacactctatttgattgattaaaattcacatgagacccaccaaatttatatggaacctacatgatttggtg 25666884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 9430247 - 9430191
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggt 201  Q
    |||||||||||||||||||||  ||| ||||||| ||||||||| ||||||||||||    
T  9430247 attggttaaaattcacatgaaccccatcaaatttgtatgggacccacatgatttggt 9430191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 16209393 - 16209437
Alignment:
Q  134 cactatctttaattggttaaaattcacatgaattccaccaaattt 178  Q
    |||| |||||||||||||||||||||||||| |||||||||||||    
T  16209393 cactctctttaattggttaaaattcacatgagttccaccaaattt 16209437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 16816285 - 16816321
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  16816285 tgataagtgctaggaagtgttaaattcatgatatatt 16816321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 16855442 - 16855478
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  16855442 tgataagtgctaggaagtgttaaattcatgatatatt 16855478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 21066874 - 21066910
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  21066874 tgataagtgctaggaagtgttaaattcatgatatatt 21066910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 21340887 - 21340923
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  21340887 tgataagtgctaggaagtgttaaattcatgatatatt 21340923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 42094233 - 42094289
Alignment:
Q  146 ttggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||||||||||    ||||||||||||||||||||| |||||||||||||    
T  42094233 ttggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtg 42094289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 12779530 - 12779588
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtga 203  Q
    |||||||||||||||||||   ||||||||||| ||||| |||| ||||||||||||||    
T  12779530 attggttaaaattcacatgggatccaccaaattcatatgtgacccacatgatttggtga 12779588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 4237279 - 4237336
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||||| |||||   |||||||||||| ||||||||| |||||||||||||    
T  4237279 attggttaaaatttacatgggatccaccaaatttgtatgggacccacatgatttggtg 4237336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 12703460 - 12703532
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaat 176  Q
    ||||||||||| || |||||||||| ||  |||| ||||| ||||||||| |||||||||| ||||| |||||    
T  12703460 aacacacattttaacacacatttttcaatacactttctttgattggttaatattcacatgagttccatcaaat 12703532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 41496077 - 41496125
Alignment:
Q  134 cactatctttaattggttaaaattcacatgaattccaccaaatttatat 182  Q
    |||||||||| |||||||||||||||||| || || |||||||||||||    
T  41496077 cactatctttgattggttaaaattcacataaaatctaccaaatttatat 41496125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 44247659 - 44247591
Alignment:
Q  134 cactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||| ||||| |||||||||||||||||||   |||| ||||||| ||||||||| |||| ||||||||    
T  44247659 cactctctttgattggttaaaattcacatgggatccatcaaatttgtatgggacccacataatttggtg 44247591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 3466410 - 3466469
Alignment:
Q  139 tctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgattt 198  Q
    ||||| ||||||||||||||||||||   |||||||||| |||||||||| ||| |||||    
T  3466410 tctttgattggttaaaattcacatgagacccaccaaattcatatgggacccacacgattt 3466469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 42251299 - 42251216
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||| |||| ||| |||| ||||| |||| ||||||||||||||   |||||||||||||||| || || |||| ||||||||    
T  42251299 acacacttttcaacacactctctttgattgattaaaattcacatgggatccaccaaatttatataggtcccacataatttggtg 42251216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 42029478 - 42029396
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggt 201  Q
    ||||| |||| ||| |||| | ||| ||||||||||||||||||||   ||||||||||||||||||  |  |||||||||||    
T  42029478 acacacttttcaacacacttttttttattggttaaaattcacatgagacccaccaaatttatatggggtccgcatgatttggt 42029396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 44247541 - 44247599
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatt 177  Q
    |||||||||| |||  ||||||||| ||||||| |||||||||||  ||||||||||||    
T  44247541 acacatttttcaacaaactatctttgattggttgaaattcacatgggttccaccaaatt 44247599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 2020393 - 2020430
Alignment:
Q  205 atgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||| || ||||||||||||||||||||||||    
T  2020393 atgataagtgttaagaagtgttaaattcatgatatatt 2020430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 15194564 - 15194621
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||| |||||||  |  |||||||| ||||||||||| |||||||||||||    
T  15194564 attggttaaaagtcacatgggtcgcaccaaatatatatgggaccgacatgatttggtg 15194621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 16209481 - 16209428
Alignment:
Q  149 gttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||| |||||  ||||||||||||||||||||| |||  ||||||||    
T  16209481 gttaaaattcaaatgaaacccaccaaatttatatgggaccgacaaaatttggtg 16209428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 17383773 - 17383846
Alignment:
Q  129 taacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||| |||| ||||| ||||||||||| ||| |||  | ||||||||||| ||||||||| |||| ||||||||    
T  17383773 taacacactctcttttattggttaaaagtcatatgggtcccaccaaatttctatgggacccacataatttggtg 17383846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 18719734 - 18719791
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaat 176  Q
    |||||||||| ||| |||| | ||| ||||||||||||||||| || |||||||||||    
T  18719734 acacatttttcaacacactctttttgattggttaaaattcacacgagttccaccaaat 18719791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 18719851 - 18719784
Alignment:
Q  134 cactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||| ||||| |||||||||| || ||||||   ||| ||||||||||||||||| |||||||||||||    
T  18719851 cactctctttgattggttaaattt-acatgagacccatcaaatttatatgggacccacatgatttggtg 18719784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 1473603 - 1473675
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaat 176  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||  |||||||||||    
T  1473603 aacacacattttaatacacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaat 1473675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 4032992 - 4033079
Alignment:
Q  121 acattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgagatga 208  Q
    |||||||| ||| |||| ||||||||||||| ||||| | ||| | |||| ||||||||||||||||| |||| ||||||||||||||    
T  4032992 acatttttcaacacactctctttaattggttgaaatttatatggaatccatcaaatttatatgggacccacataatttggtgagatga 4033079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 24784002 - 24783919
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||||||| |||||||||| |||| |||||||| ||||||  |||| ||||||||||||| | | |||||||||||||    
T  24784002 acacattttttaacacactatctttgattgattaaaatttacatgagatccatcaaatttatatggaatccacatgatttggtg 24783919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 6643318 - 6643401
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||| ||||||| |||| || || ||||||||||||||||||     ||||||||||||||||||||| |||||||||||||    
T  6643318 acacatattttaacacactctcattgattggttaaaattcacatagtgaccaccaaatttatatgggacccacatgatttggtg 6643401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 479791 - 479891
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtga 203  Q
    |||||| |||| |||| |||||||| ||  |||| | ||| ||||||||||||||||||  || ||||||||||||||| || || ||||||||||||||    
T  479791 aacacaaattttaataaacatttttcaaaacactttatttgattggttaaaattcacattgatcccaccaaatttatat-ggccccacatgatttggtga 479889  T
Q  204 ga 205  Q
    ||    
T  479890 ga 479891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 4787868 - 4787767
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtga 203  Q
    ||||||||||| || | ||||||||||||   || ||||| ||||||||||| |||||||| ||| || |||| |||||||| |  ||||||||||||||    
T  4787868 aacacacattttaacatacattttttaacagtctctctttgattggttaaaactcacatgagttctactaaatctatatgggtctcacatgatttggtga 4787769  T
Q  204 ga 205  Q
    ||    
T  4787768 ga 4787767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 7693670 - 7693727
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||||||||||  |||||||||||||||||||||||   |||||||||||||    
T  7693670 attggttaaaattcacactaattccaccaaatttatatgggagtgacatgatttggtg 7693727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 12731577 - 12731640
Alignment:
Q  139 tctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||| ||||||||||||||||||||   ||| ||||||||| ||||||| |||||||||||||    
T  12731577 tctttgattggttaaaattcacatgagacccatcaaatttatttgggacccacatgatttggtg 12731640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 4494397 - 4494477
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttg 199  Q
    |||||||||| ||| |||| ||||| |||||||||||||||| |    ||||||||||||||||| |||  ||||||||||    
T  4494397 acacatttttcaacacactttctttgattggttaaaattcacgtctgatccaccaaatttatatgagactcacatgatttg 4494477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 4033143 - 4033086
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcaca 161  Q
    ||||||||||| || ||||| |||| ||  |||||||||| |||||||||||||||||    
T  4033143 aacacacattttaacacacacttttcaatacactatctttgattggttaaaattcaca 4033086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 26328211 - 26328247
Alignment:
Q  166 ttccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  26328211 ttccaccaaatttatatgggacccacatgattcggtg 26328247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 23318025 - 23317962
Alignment:
Q  139 tctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||    
T  23318025 tctttaattggttaaaattcacatgagatccactaaatttatatgggacccacatgatttggtg 23317962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 2542705 - 2542788
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||| ||| |||| ||||| ||||||||||||| ||||||   ||||||||||||||||| ||| |||||||||||||    
T  2542705 acacatttttcaacacactctctttgattggttaaaatttacatgaggcccaccaaatttatatggaacccacatgatttggtg 2542788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 31970123 - 31970206
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||| ||| |||| | ||| ||||||||||||||||||  |  ||||||||||||||||||||| |||||||||||||    
T  31970123 acacatttttcaacacactctttttgattggttaaaattcacattgaacccaccaaatttatatgggacccacatgatttggtg 31970206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 27666984 - 27667083
Alignment:
Q  107 acacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgagat 206  Q
    |||||||| || | |||||||||||  || | | ||| |||| ||||||||||||| ||||| || |||||||||||||||  |||||||||||||||||    
T  27666984 acacattttaacatacattttttaatacattgtatttgattgattaaaattcacataaattctactaaatttatatgggactcacatgatttggtgagat 27667083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 49822664 - 49822581
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||| ||| |||| ||||| ||||||||||||||||||| || ||| |||||||||| |||||| | || ||||||||    
T  49822664 acacatttttcaacacactctctttgattggttaaaattcacatggatcccatcaaatttatacgggacccatataatttggtg 49822581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 40669065 - 40668979
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgaga 205  Q
    ||||| |||| ||| |||| ||||| ||||||||||||||||| |  |||||||||||||||||||| || |||| |||| ||||||    
T  40669065 acacacttttcaacacactctctttgattggttaaaattcacacgggttccaccaaatttatatgggtcccacataattttgtgaga 40668979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 45563201 - 45563119
Alignment:
Q  120 cacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||| |||| ||| |||| ||||| || |||||||||| ||||||  ||||||||||||||||| || |||||||||||||||    
T  45563201 cacacttttcaacacactttctttgatcggttaaaatttacatgagatccaccaaatttatatgagatcaacatgatttggtg 45563119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 731359 - 731416
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||| |||||||||||||||  | |||||||||||||||||||| |||||||||||||    
T  731359 attgattaaaattcacatgagattcaccaaatttatatgggacccacatgatttggtg 731416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 23761310 - 23761346
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  23761310 tgataagtgctaggaagtgttaaattcatgatatatt 23761346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 26622735 - 26622699
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  26622735 tgataagtgctaggaagtgttaaattcatgatatatt 26622699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 32798988 - 32798952
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  32798988 tgataagtgctaggaagtgttaaattcatgatatatt 32798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 41304477 - 41304513
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  41304477 tgataagtgctaggaagtgttaaattcatgatatatt 41304513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 34437748 - 34437651
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||| || || || |||| ||| |||| ||||| |||||||||||||||||||  | || ||||| ||||||||| || |||||||||||||    
T  34437748 aacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacatgggtccccccaaa-ttatatgggtcccacatgatttggtg 34437651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 18075266 - 18075217
Alignment:
Q  153 aaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||| ||| || ||||||||||||||||||||| |||||||||||||    
T  18075266 aaattcatatggatcccaccaaatttatatgggacccacatgatttggtg 18075217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 38663765 - 38663704
Alignment:
Q  141 tttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||||||||||||||||    ||||||||||||||| ||||| | |||||||||||    
T  38663765 tttaattggttaaaattcacatgggacccaccaaatttatataggacccatatgatttggtg 38663704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 1175867 - 1175831
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    ||||||| |||||||||||||||||||||||||||||    
T  1175867 tgataagggctaggaagtgttaaattcatgatatatt 1175831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 45925133 - 45925197
Alignment:
Q  141 tttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgaga 205  Q
    |||||||| |||||||| | ||| | |||| ||||||||||||||||| |||| |||||||||||    
T  45925133 tttaattgattaaaattgatatggagtccatcaaatttatatgggacccacataatttggtgaga 45925197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 32543808 - 32543766
Alignment:
Q  141 tttaattggttaaaattcacatgaattccaccaaatttatatg 183  Q
    |||||||||||||||||||||||||| |  |||||||||||||    
T  32543808 tttaattggttaaaattcacatgaatcctgccaaatttatatg 32543766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 7444387 - 7444334
Alignment:
Q  149 gttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||||||||    | ||||||||||||||||||| |||||||||||||    
T  7444387 gttaaaattcacatgggacctaccaaatttatatgggacccacatgatttggtg 7444334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 45215437 - 45215380
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||| |||||||||| |||| |||||||||||||||| ||  || |||||||||||||    
T  45215437 attgattaaaattcatatgagttccaccaaatttatacggatcctacatgatttggtg 45215380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 49403604 - 49403528
Alignment:
Q  123 attttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttg 199  Q
    |||||| ||| |||| | ||| ||| ||||||||||||||||   ||||||||||||||||| ||| |||| |||||    
T  49403604 atttttcaacacacttttttttatttgttaaaattcacatgagacccaccaaatttatatggaacccacataatttg 49403528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 2276280 - 2276363
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||| |||| ||| |||| ||||| ||||||||||||||||||| || |||||||||||||| |||||| |||| ||||||||    
T  2276280 acacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatttataagggacccacataatttggtg 2276363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 2276406 - 2276355
Alignment:
Q  126 ttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatt 177  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  2276406 ttttaacacactatctttaattggttaaaattcacatgaatcccaccaaatt 2276355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 7526142 - 7526207
Alignment:
Q  140 ctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgaga 205  Q
    |||| ||| ||||||||||||||| || |||||||||||||||| ||||| |||||||||||||||    
T  7526142 ctttgatttgttaaaattcacatggatcccaccaaatttatatgagaccagcatgatttggtgaga 7526207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 15953754 - 15953717
Alignment:
Q  205 atgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15953754 atgataagtgctaggaagtgttaaattcatgatatatt 15953717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 19091059 - 19091022
Alignment:
Q  205 atgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19091059 atgataagtgctaggaagtgttaaattcatgatatatt 19091022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 1947791 - 1947827
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  1947791 tgataagtgctaggaagtgttaaattcatgatatatt 1947827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 12275756 - 12275824
Alignment:
Q  134 cactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||| |||| |||||||||||| |||||||    ||||||||||||||||||||| |||||||||||||    
T  12275756 cactctcttcaattggttaaaaatcacatgggacccaccaaatttatatgggacccacatgatttggtg 12275824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 33849658 - 33849694
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  33849658 tgataagtgctaggaagtgttaaattcatgatatatt 33849694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 316389 - 316441
Alignment:
Q  146 ttggttaaaattcacatgaattccaccaaatttatatgggaccaacatgattt 198  Q
    ||||||||||||||||||| ||||||||||||| |||| |||| || ||||||    
T  316389 ttggttaaaattcacatgagttccaccaaatttgtatgagacccacttgattt 316441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 15925428 - 15925392
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    ||||||||||||| |||||||||||||||||||||||    
T  15925428 tgataagtgctagaaagtgttaaattcatgatatatt 15925392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 26862923 - 26862999
Alignment:
Q  126 ttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||| |||| || || |||||||||||||||||||   | ||||| |||||||| ||||| |||||||||||||    
T  26862923 ttttaacacactctccttgattggttaaaattcacatgggattcaccatatttatataggacccacatgatttggtg 26862999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 26863064 - 26862992
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaat 176  Q
    ||||||||||| |||||||| |||| | |  ||| |||||||||||||||||||||||||  | |||||||||    
T  26863064 aacacacattttaatacacacttttcatcaaactctctttaattggttaaaattcacatgggtcccaccaaat 26862992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 33597068 - 33597015
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttgg 200  Q
    ||||||||||||||||||||  |||||| |||| ||||||||||||||| ||||||    
T  33597068 attggttaaaattcacatga--tccacccaattcatatgggaccaacataatttgg 33597015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 10056652 - 10056707
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttgg 200  Q
    |||||| |||||||||||| |  ||||||| ||||||||||||| |||||||||||    
T  10056652 attggtcaaaattcacatggaacccaccaattttatatgggacccacatgatttgg 10056707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 36992939 - 36992872
Alignment:
Q  139 tctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgagat 206  Q
    ||||||||| |||| |||||||||||   |||||||| | |||||||||  |||||||||||||||||    
T  36992939 tctttaatttgttagaattcacatgagacccaccaaaatcatatgggacttacatgatttggtgagat 36992872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 46074184 - 46074146
Alignment:
Q  126 ttttaacgcactatctttaattggttaaaattcacatga 164  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  46074184 ttttaacacactctctttaattggttaaaattcacatga 46074146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 640985 - 640932
Alignment:
Q  149 gttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||||||||  || ||||||||||||||| | | |||||||||||||    
T  640985 gttaaaattcacatgagatctaccaaatttatatggaatccacatgatttggtg 640932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 3235547 - 3235636
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacat 193  Q
    ||||||||||| || ||||| |||  ||  |||| ||||| ||||||||||||||||||||   ||| |||||||| |||||||| ||||    
T  3235547 aacacacattttaacacacactttccaatacactctctttgattggttaaaattcacatgagacccatcaaatttacatgggacccacat 3235636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 18802954 - 18802893
Alignment:
Q  141 tttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||||||||||| |||   ||| | |||||||||||| |||||||| ||||||||    
T  18802954 tttaattggttaaaattcatatgggatccgcgaaatttatatggaaccaacattatttggtg 18802893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 40803295 - 40803214
Alignment:
Q  103 aaacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgg 184  Q
    |||||||||||  || | ||| |||||||  |||||| ||| |||||||||||||||||||   ||||||||| ||||||||    
T  40803295 aaacacacattctaacatacactttttaaaacactattttttattggttaaaattcacatgggatccaccaaacttatatgg 40803214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 45200564 - 45200503
Alignment:
Q  141 tttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||| ||||||||||  |||  ||||||||||||||||| || | |||||||||||||    
T  45200564 tttaattgattaaaattcatttgaggtccaccaaatttatatgagatccacatgatttggtg 45200503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 48497741 - 48497688
Alignment:
Q  149 gttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||||||||| ||||| |||||||  ||||| | |||||||||||||    
T  48497741 gttaaaattcacatgaaatccactaaatttacgtgggatccacatgatttggtg 48497688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 32097538 - 32097478
Alignment:
Q  139 tctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttg 199  Q
    ||||||||| | ||||||  |||||||||||| ||||||||||||  |||||||| |||||    
T  32097538 tctttaattcgctaaaatctacatgaattccatcaaatttatatgaaaccaacataatttg 32097478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 36914877 - 36914958
Alignment:
Q  103 aaacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgg 184  Q
    ||||| |||||| || |||||||||| |||  | |||||||||||| |||||||||||||| |||| |||||||||||||||    
T  36914877 aaacatacattttaacacacatttttcaacatattatctttaattgattaaaattcacatggattcaaccaaatttatatgg 36914958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 34504384 - 34504463
Alignment:
Q  123 attttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||| ||| |||| | ||| ||||||||||||||||||| |   |||||||||||||||||||| |||||||||||||    
T  34504384 atttttcaacacactctttttgattggttaaaattcacatggaactcaccaaatttatatgggacccacatgatttggtg 34504463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 17893305 - 17893403
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||| || | ||||||||||||  ||| ||||| ||| ||||||| |||||||| |||||| |||| |||||||| |  |||||||||||||    
T  17893305 aacacacattttaacatacattttttaacagactctctttgattagttaaaactcacatgagttccactaaatctatatgggtctcacatgatttggtg 17893403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 40175923 - 40175980
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    |||||||||||||||||||   |||||||||||||||||||||| |||| ||||||||    
T  40175923 attggttaaaattcacatgggatccaccaaatttatatgggacccacataatttggtg 40175980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 38835110 - 38835050
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgaga 205  Q
    ||||||||||||||||||  | || |||||||||||||||||||  |||||||||||||||    
T  38835110 attggttaaaattcacatagaatctaccaaatttatatgggacccgcatgatttggtgaga 38835050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 4994304 - 4994208
Alignment:
Q  104 aacacacatttcaatacacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||||||||| || ||||| |||||||| ||||  |||| |||||||||||||   ||||   |||| |||||||||||||||| |||||||||||||    
T  4994304 aacacacattttaacacacaatttttaacacact--ctttgattggttaaaatttgtatgagacccacaaaatttatatgggacccacatgatttggtg 4994208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 2288715 - 2288651
Alignment:
Q  139 tctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtga 203  Q
    ||||| |||||||||||||||||||   |||| ||||||||||||||||| |  |||||||||||    
T  2288715 tctttgattggttaaaattcacatgggatccatcaaatttatatgggacccatgtgatttggtga 2288651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 21124979 - 21125039
Alignment:
Q  145 attggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtgaga 205  Q
    ||||||||||||||| ||| | |||| ||||||||||||||| | |||||||||| |||||    
T  21124979 attggttaaaattcatatggaatccatcaaatttatatgggatccacatgatttgatgaga 21125039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 27072902 - 27072865
Alignment:
Q  168 ccaccaaatttatatgggaccaacatgatttggtgaga 205  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  27072902 ccaccaaatttatatgggatccacatgatttggtgaga 27072865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 2171128 - 2171056
Alignment:
Q  126 ttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgattt 198  Q
    ||||||| |||| | |||||||||||||||||| | || |  |||||||||||||||||| || |||| ||||    
T  2171128 ttttaacacactctttttaattggttaaaattcgcttggaccccaccaaatttatatgggtccgacataattt 2171056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 11092 - 11128
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  11092 tgataagtgctaggaagtgttaaattcatgatatatt 11128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 7838 - 7874
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  7838 tgataagtgctaggaagtgttaaattcatgatatatt 7874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 66043 - 66007
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  66043 tgataagtgctaggaagtgttaaattcatgatatatt 66007  T

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Target: scaffold0053; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 71712 - 71676
Alignment:
Q  206 tgataagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  71712 tgataagtgctaggaagtgttaaattcatgatatatt 71676  T

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Target: scaffold0137 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 8316 - 8234
Alignment:
Q  119 acacattttttaacgcactatctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttggtg 202  Q
    ||||| |||| |||||| | | ||| ||||| |||||||||||||||| |||||||| |||| ||||||| |||||||||||||    
T  8316 acacacttttcaacgcattctttttgattggctaaaattcacatgaatcccaccaaa-ttatgtgggacccacatgatttggtg 8234  T

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Target: scaffold0060 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 16351 - 16319
Alignment:
Q  210 aagtgctaggaagtgttaaattcatgatatatt 242  Q
    |||||||||||||||||||||||||||||||||    
T  16351 aagtgctaggaagtgttaaattcatgatatatt 16319  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 136344 - 136404
Alignment:
Q  139 tctttaattggttaaaattcacatgaattccaccaaatttatatgggaccaacatgatttg 199  Q
    ||||| ||||||||||||||| |||| | ||| |||||||||||||| |  ||||||||||    
T  136344 tctttgattggttaaaattcatatgagtcccatcaaatttatatgggtcacacatgatttg 136404  T

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