View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21350_high_4 (Length: 261)
Name: NF21350_high_4
Description: NF21350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21350_high_4 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 116 - 261
Target Start/End: Complemental strand, 44421494 - 44421349
Alignment:
| Q |
116 |
atggagtctaatggcggtggagccacaaataaaaggcaaaggttgccgtacagtcctgcagaattagctgccatggaggtgggcctatattgctaaatgg |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44421494 |
atggagtctaatggcggtggagccgcaaataaaaggcaaaggttgccgtacagtcctgcagaattagctgccatggaggtgggcctatattgctaaatgg |
44421395 |
T |
|
| Q |
216 |
ttgcactgatgttatttttaaagctattagtttagtttctcacttc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44421394 |
ttgcactgatgttatttttaaagctattagtttagtttctcacttc |
44421349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 44420055 - 44420168
Alignment:
| Q |
7 |
gtatgggtgtacgaccagcactttttaagaagggcaataggtcagggcctccatactccaacaattcattctcaagacctaagtctatcatagcctgata |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44420055 |
gtatgggtgtacgaccagcacttttcaagaagggcaataggtcagggcctccatactccaacaattcattctcaagacctaagtctatcatagcctgata |
44420154 |
T |
|
| Q |
107 |
aagatactcatgga |
120 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
44420155 |
aagatactcatgga |
44420168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University