View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21350_low_1 (Length: 650)
Name: NF21350_low_1
Description: NF21350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21350_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 588
Target Start/End: Complemental strand, 43974647 - 43974086
Alignment:
| Q |
19 |
ggggaattgggcccacttaaatagaacaagaacatgaatgaaaattttccgttggagtgaaaaatggattgattttttgaaatcctacctctcacgtttg |
118 |
Q |
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| T |
43974647 |
ggggaattgggcccacttaaatagaacaagaa----aatgaaaattttccgttggagtgaaaaatggattgattttttgaaatcctacctctcacgtttg |
43974552 |
T |
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| Q |
119 |
gactcacaaaaatgtaaccaagaacaaaaattacagtgctagtgttggagatgctctaatgaaatgtannnnnnnnnnnnnnnaagaaagtgatgaaatg |
218 |
Q |
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| T |
43974551 |
gactcacaaaaatgtaaccaagaacaaaa-ttacaatgctagtgttggagatgctctaatgaaatgtatttttttttttttttaagaaagtaatgaaatg |
43974453 |
T |
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| Q |
219 |
tacttattatatttgatatcaccaaatatgagtattgagtagtgttttgcttatatattagagctcgggtggagtatataagaaattcaaagtaaactct |
318 |
Q |
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| T |
43974452 |
tacttattatatttgatatcaccaaatatgagtattgagtagtgttttgcttatatattagagctcgggtggagtatataagaaactcaaagtaaactct |
43974353 |
T |
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| Q |
319 |
tcttgcaattgcctcatgtacttcgctatgttctattcatttattatagccgtaaaacattaatttcctttcaaggaggaaggtgaagaaggtcacatac |
418 |
Q |
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| T |
43974352 |
t---gcaattgcctcatgtacttcgctatgttctattcatttattatagccgtaaaacattaatttcctttcaaggaggaaggtgaagaaggtcacatac |
43974256 |
T |
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| Q |
419 |
tgatcttagagttagatcctctcattttatgggtagcttacctatatatatggggcattactacttgcattcagnnnnnnngtagccatatttagtttac |
518 |
Q |
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| T |
43974255 |
tgatcttagagttagatcctctcattttatgggtagcttacctatatatatggggcattactacttgcattcagaaaaaaagtagccatatttagtttac |
43974156 |
T |
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| Q |
519 |
tcctcttaaataactagacctaccatcttgtaaaataaaataggatacaacaatagtatttgcttttccc |
588 |
Q |
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| T |
43974155 |
tcctcttaaataactagacctaccatcttgtaaaataaaataggatacaacaatagtatttgcttttccc |
43974086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 631
Target Start/End: Complemental strand, 43974073 - 43974044
Alignment:
| Q |
602 |
atatatattggatacaatatttaccactag |
631 |
Q |
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| T |
43974073 |
atatatattggatacaatatttaccactag |
43974044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 31 - 173
Target Start/End: Original strand, 40118802 - 40118941
Alignment:
| Q |
31 |
ccacttaaatagaacaagaacatgaatgaaaattttccgttggagtgaaaaatggattgattttttgaaatcctacctctcacgtttggactcacaaaaa |
130 |
Q |
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| T |
40118802 |
ccacttaaatagaacaagaacatgaatgaaaattttccttttgaaag-aaaatggattga-ttttggaaatcctacttgtcacgtttggacccacaaaaa |
40118899 |
T |
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| Q |
131 |
tgtaaccaagaacaaaaattacagtgctagtgttggagatgct |
173 |
Q |
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| T |
40118900 |
tataagcaagaac-aaaatttcaatgcaagcgttggagatgct |
40118941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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