View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21350_low_7 (Length: 202)
Name: NF21350_low_7
Description: NF21350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21350_low_7 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 13520 - 13707
Alignment:
| Q |
1 |
atgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacacccatcattagggatgctgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13520 |
atgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacacccatcattagggatgctgttg |
13619 |
T |
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| Q |
101 |
agagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctctttgtgtataatctttttcattattttcttcttctcc |
188 |
Q |
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| T |
13620 |
agagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctctttgtgtataatctttttcatcattttcttcttctcc |
13707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 19200 - 19387
Alignment:
| Q |
1 |
atgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacacccatcattagggatgctgttg |
100 |
Q |
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| T |
19200 |
atgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacacccatcattagggatgctgttg |
19299 |
T |
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| Q |
101 |
agagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctctttgtgtataatctttttcattattttcttcttctcc |
188 |
Q |
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| T |
19300 |
agagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctctttgtgtataatctttttcatcattttcttcttctcc |
19387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 1293074 - 1292887
Alignment:
| Q |
1 |
atgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacacccatcattagggatgctgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1293074 |
atgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacacccatcattagggatgctgttg |
1292975 |
T |
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| Q |
101 |
agagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctctttgtgtataatctttttcattattttcttcttctcc |
188 |
Q |
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| T |
1292974 |
agagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctctttgtgtataatctttttcatcattttcttcttctcc |
1292887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 12281624 - 12281540
Alignment:
| Q |
70 |
gcaccaacacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctcttt |
154 |
Q |
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||||| |||||||||||||| || ||||| |||| ||| ||||| ||||| |||||||||||||| || |||||||||| ||||| |
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| T |
12281624 |
gcaccgacacccatcattagcgaagctgtagagactaatccatcgttagcgcctaaaacagctgctcttagccattgtgatcttt |
12281540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 44635687 - 44635765
Alignment:
| Q |
76 |
acacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctcttt |
154 |
Q |
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|||||||||||||| ||||||||||| | ||| ||||||||||| |||||||| || || | |||||||||| ||||| |
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| T |
44635687 |
acacccatcattagtgatgctgttgaaactaatccatcattagctcctaaaactgcggcacgtagccattgtgatcttt |
44635765 |
T |
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