View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21351_high_1 (Length: 657)

Name: NF21351_high_1
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21351_high_1
NF21351_high_1
[»] scaffold0470 (4 HSPs)
scaffold0470 (140-511)||(2093-2464)
scaffold0470 (600-657)||(1947-2004)
scaffold0470 (1-61)||(1638-1698)
scaffold0470 (101-146)||(1738-1783)
[»] chr8 (19 HSPs)
chr8 (140-511)||(6612805-6613176)
chr8 (332-421)||(6660429-6660518)
chr8 (332-421)||(6740831-6740920)
chr8 (332-421)||(6758338-6758427)
chr8 (332-421)||(6582170-6582263)
chr8 (600-657)||(6612659-6612716)
chr8 (1-61)||(6612350-6612410)
chr8 (101-146)||(6612450-6612495)
chr8 (263-321)||(6582371-6582429)
chr8 (263-321)||(6660629-6660687)
chr8 (263-321)||(6741031-6741089)
chr8 (140-192)||(6582448-6582500)
chr8 (140-192)||(6758623-6758675)
chr8 (263-321)||(6758546-6758604)
chr8 (141-184)||(6601733-6601776)
chr8 (141-184)||(6677186-6677229)
chr8 (140-192)||(6660706-6660758)
chr8 (140-192)||(6741108-6741160)
chr8 (144-176)||(6746176-6746208)


Alignment Details
Target: scaffold0470 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 140 - 511
Target Start/End: Complemental strand, 2464 - 2093
Alignment:
Q  140 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtgannnnnnnnaatttaccttacatattatgcattatgtattgcacatat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||   ||||||||  ||||||    
T  2464 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtgattttttttaatttaccctacatattatgtcatatgtattatacatat 2365  T
Q  240 caacttagctaaacttaggaggataaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaaagnnnnnnnctaataaat 339  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  2364 caacttagttaaacttaggaggataaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaaagtttttttctaataaat 2265  T
Q  340 tgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttttatgttttc 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2264 tgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttttatgttttc 2165  T
Q  440 ctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2164 ctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg 2093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 2004 - 1947
Alignment:
Q  600 gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacata 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2004 gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacata 1947  T

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Target: scaffold0470; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1638 - 1698
Alignment:
Q  1 actcttttgtgtctttcttctctcactatcttatctacgtctactatatatgcctcatatt 61  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1638 actcttttgtgtctctcttctctcactatcttatctacgtctactatatatgcctcatatt 1698  T

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Target: scaffold0470; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 1738 - 1783
Alignment:
Q  101 atcacatatctcagaatggagatatatgctctagctttaataggat 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1738 atcacatatctcagaatggagatatatgctctagctttaataggat 1783  T

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Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 140 - 511
Target Start/End: Complemental strand, 6613176 - 6612805
Alignment:
Q  140 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtgannnnnnnnaatttaccttacatattatgcattatgtattgcacatat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||   ||||||||  ||||||    
T  6613176 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtgattttttttaatttaccctacatattatgtcatatgtattatacatat 6613077  T
Q  240 caacttagctaaacttaggaggataaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaaagnnnnnnnctaataaat 339  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  6613076 caacttagttaaacttaggaggataaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaaagtttttttctaataaat 6612977  T
Q  340 tgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttttatgttttc 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612976 tgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttttatgttttc 6612877  T
Q  440 ctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612876 ctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg 6612805  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 6660518 - 6660429
Alignment:
Q  332 taataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaag 421  Q
    |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||    
T  6660518 taataaattgatttaaaaagtataatagaaaagagataaaactagtattaactaaaatgacatttgtgttgaagtcaattgcatggaaag 6660429  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 6740920 - 6740831
Alignment:
Q  332 taataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaag 421  Q
    |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||    
T  6740920 taataaattgatttaaaaagtataatagaaaagagataaaactagtattaactaaaatgacatttgtgttgaagtcaattgcatggaaag 6740831  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 6758427 - 6758338
Alignment:
Q  332 taataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaag 421  Q
    |||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||| ||||||||||||| ||||||||||||||    
T  6758427 taataaattgatttaaaaagtataatagaaaagagataaaactggtattaactaaaatgacttttgtgttgaagtcaattgcatggaaag 6758338  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 6582263 - 6582170
Alignment:
Q  332 taataaattgatttaaaatgtataatagaaaagagataaaatta----ttattaactaaaatgacatttgtgttgaagttaattgcatggaaag 421  Q
    |||||||||||||||||| |||||||||||||||||||||| ||     |||||||||||||||||||||||||||||| ||||||||||||||    
T  6582263 taataaattgatttaaaaagtataatagaaaagagataaaactagtatatattaactaaaatgacatttgtgttgaagtcaattgcatggaaag 6582170  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 6612716 - 6612659
Alignment:
Q  600 gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacata 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612716 gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacata 6612659  T

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Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6612350 - 6612410
Alignment:
Q  1 actcttttgtgtctttcttctctcactatcttatctacgtctactatatatgcctcatatt 61  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6612350 actcttttgtgtctctcttctctcactatcttatctacgtctactatatatgcctcatatt 6612410  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 6612450 - 6612495
Alignment:
Q  101 atcacatatctcagaatggagatatatgctctagctttaataggat 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6612450 atcacatatctcagaatggagatatatgctctagctttaataggat 6612495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 6582429 - 6582371
Alignment:
Q  263 taaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaa 321  Q
    |||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||||    
T  6582429 taaatttaaatacacatttaattttacgggatagtgttttaggttttgtggtagtgaaa 6582371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 6660687 - 6660629
Alignment:
Q  263 taaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaa 321  Q
    |||||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||    
T  6660687 taaatttaaatacatacttaattatacgggatagtgttttaggttttgtggtagtgaaa 6660629  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 6741089 - 6741031
Alignment:
Q  263 taaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaa 321  Q
    |||||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||    
T  6741089 taaatttaaatacatacttaattatacgggatagtgttttaggttttgtggtagtgaaa 6741031  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 6582500 - 6582448
Alignment:
Q  140 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtga 192  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  6582500 atagcattgaagtgagtggtttggaatcaaaatggttttgacaaaatccgtga 6582448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 6758675 - 6758623
Alignment:
Q  140 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtga 192  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  6758675 atagcattgaagtgagtggtttggaatcaaaatggttttgacaaaatccgtga 6758623  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 6758604 - 6758546
Alignment:
Q  263 taaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaa 321  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||  ||||||||||    
T  6758604 taaatttaaatacacacttaattatacgggatagtgttttaggttttacggtagtgaaa 6758546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 6601776 - 6601733
Alignment:
Q  141 taggattgaagtgagtggtttggaatcaaaatggttttgataaa 184  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  6601776 taggattgaagtgattggtttggaatcaaaatggttgtgataaa 6601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 6677229 - 6677186
Alignment:
Q  141 taggattgaagtgagtggtttggaatcaaaatggttttgataaa 184  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  6677229 taggattgaagtgattggtttggaatcaaaatggttgtgataaa 6677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 6660758 - 6660706
Alignment:
Q  140 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtga 192  Q
    |||| |||||||||| |||||| ||||||||||||||| || ||| |||||||    
T  6660758 atagcattgaagtgaatggtttcgaatcaaaatggtttcgacaaaatccgtga 6660706  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 6741160 - 6741108
Alignment:
Q  140 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtga 192  Q
    |||| |||||||||| |||||| ||||||||||||||| || ||| |||||||    
T  6741160 atagcattgaagtgaatggtttcgaatcaaaatggtttcgacaaaatccgtga 6741108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 6746208 - 6746176
Alignment:
Q  144 gattgaagtgagtggtttggaatcaaaatggtt 176  Q
    ||||||||||| |||||||||||||||||||||    
T  6746208 gattgaagtgactggtttggaatcaaaatggtt 6746176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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