View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21351_high_15 (Length: 297)

Name: NF21351_high_15
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21351_high_15
NF21351_high_15
[»] chr2 (17 HSPs)
chr2 (79-279)||(15019187-15019384)
chr2 (142-273)||(31968675-31968803)
chr2 (203-273)||(15012816-15012886)
chr2 (1-38)||(4723611-4723648)
chr2 (1-38)||(11126509-11126546)
chr2 (1-38)||(12208487-12208524)
chr2 (1-38)||(13881140-13881177)
chr2 (1-38)||(14021265-14021302)
chr2 (1-38)||(19523390-19523427)
chr2 (1-38)||(19637274-19637311)
chr2 (1-38)||(19835867-19835904)
chr2 (1-38)||(32128177-32128214)
chr2 (1-38)||(35705906-35705943)
chr2 (1-38)||(41868358-41868395)
chr2 (1-37)||(6885469-6885505)
chr2 (231-279)||(14542573-14542621)
chr2 (1-37)||(16051406-16051442)
[»] chr6 (4 HSPs)
chr6 (1-38)||(9395326-9395363)
chr6 (1-38)||(16121197-16121234)
chr6 (1-38)||(21506381-21506418)
chr6 (1-38)||(22422195-22422232)
[»] chr4 (11 HSPs)
chr4 (1-38)||(22893913-22893950)
chr4 (1-38)||(22945581-22945618)
chr4 (1-36)||(46355282-46355317)
chr4 (1-38)||(4577602-4577639)
chr4 (1-38)||(9472502-9472539)
chr4 (1-38)||(37380316-37380353)
chr4 (1-38)||(39881019-39881056)
chr4 (1-37)||(9095983-9096019)
chr4 (2-38)||(37775417-37775453)
chr4 (1-37)||(40755967-40756003)
chr4 (1-37)||(55996468-55996504)
[»] chr3 (7 HSPs)
chr3 (1-38)||(2935500-2935537)
chr3 (1-38)||(29057693-29057730)
chr3 (1-38)||(35368656-35368693)
chr3 (1-38)||(50745594-50745631)
chr3 (1-37)||(8627903-8627939)
chr3 (2-38)||(43220131-43220167)
chr3 (1-37)||(51032613-51032649)
[»] chr5 (5 HSPs)
chr5 (2-38)||(3031879-3031915)
chr5 (1-36)||(18729278-18729313)
chr5 (1-38)||(7080575-7080612)
chr5 (1-38)||(20985518-20985555)
chr5 (6-38)||(32424996-32425028)
[»] chr8 (9 HSPs)
chr8 (1-38)||(6243079-6243116)
chr8 (1-38)||(9550396-9550433)
chr8 (1-38)||(21649157-21649194)
chr8 (1-38)||(22836128-22836165)
chr8 (1-38)||(42716365-42716402)
chr8 (1-38)||(43590739-43590776)
chr8 (2-38)||(7279916-7279952)
chr8 (1-37)||(32234441-32234477)
chr8 (1-37)||(42688473-42688509)
[»] chr7 (7 HSPs)
chr7 (1-38)||(17039202-17039239)
chr7 (1-38)||(40108169-40108206)
chr7 (1-37)||(16567362-16567398)
chr7 (1-37)||(16598264-16598300)
chr7 (1-37)||(33465028-33465064)
chr7 (1-37)||(49142506-49142542)
chr7 (1-37)||(49147568-49147604)
[»] chr1 (4 HSPs)
chr1 (1-38)||(11121526-11121563)
chr1 (1-38)||(40240100-40240137)
chr1 (1-37)||(37947209-37947245)
chr1 (1-37)||(40118704-40118740)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 79 - 279
Target Start/End: Original strand, 15019187 - 15019384
Alignment:
Q  79 gagagatgcaactttgtctggataatcaaaattgttgggcgctaaagatttttcaccaacaagcttatctcctcattccacaccgcaaacactatgtcac 178  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019187 gagagttggaactttgtctggataatcaaaattgttgggcgctaaagatttttcaccaacaagcttatctcctcattccacaccgcaaacactatgtcac 15019286  T
Q  179 tatctggttatctccaacacaacaacaacactcacattgtactctcaaaatcacccatgttcaacaaattgtttttctcccagaatcttgttttatgtct 278  Q
    ||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15019287 tatctggttatctccaac---acaacaacactcacattgaactctcaaaatcacccatgtccaacaaattgtttttctcccagaatcttgttttatgtct 15019383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 31968675 - 31968803
Alignment:
Q  142 cttatctcctcattccacaccgcaaacactatgtcactatctggttatctccaacacaacaacaacactcacattgtactctcaaaatcacccatgttca 241  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||   |||||||||||||| ||||||||||||| |||||| ||    
T  31968675 cttatctcctcattccacgccgcaaacactatgtcactgtctggtcatctccaacacaa---caacactcacattgaactctcaaaatcaaccatgtcca 31968771  T
Q  242 acaaattgtttttctcccagaatcttgtttta 273  Q
    ||||||||||||||||||| ||||||||||||    
T  31968772 acaaattgtttttctcccataatcttgtttta 31968803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 15012816 - 15012886
Alignment:
Q  203 acaacactcacattgtactctcaaaatcacccatgttcaacaaattgtttttctcccagaatcttgtttta 273  Q
    |||||||| || ||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  15012816 acaacacttaccttgaactctcagaatcaaccatgtccaacaaattgtttttctcccagaatcttgtttta 15012886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4723648 - 4723611
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  4723648 gagagaataagaagataatgtgagtatgagagagaaag 4723611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11126546 - 11126509
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  11126546 gagagaataagaagataatgtgagtatgagagagaaag 11126509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12208524 - 12208487
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  12208524 gagagaataagaaaataatgtgagtatgaaagagaaag 12208487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13881177 - 13881140
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13881177 gagagaataagaagataatgtgagtatgaaagataaag 13881140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14021302 - 14021265
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  14021302 gagagaataagaagataatgtgagtatgaaagataaag 14021265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19523390 - 19523427
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  19523390 gagagaataagaagataatgtgagtatgagagagaaag 19523427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19637311 - 19637274
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    |||||||||||  |||||||||||||||||||||||||    
T  19637311 gagagaataagatgataatgtgagtatgaaagagaaag 19637274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19835904 - 19835867
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    |||||||||||  |||||||||||||||||||||||||    
T  19835904 gagagaataagatgataatgtgagtatgaaagagaaag 19835867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32128214 - 32128177
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  32128214 gagagaataaaaagataatgtgagtatgaaagagaaag 32128177  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35705906 - 35705943
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  35705906 gagagaataagaagataacgtgagtatgaaagagaaag 35705943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41868358 - 41868395
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  41868358 gagagaataagaagataatgtgagtatgagagagaaag 41868395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6885469 - 6885505
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  6885469 gagagaataagaagataatgtgagtatgagagagaaa 6885505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 14542573 - 14542621
Alignment:
Q  231 acccatgttcaacaaattgtttttctcccagaatcttgttttatgtctc 279  Q
    ||||||||| ||||||| |||| ||||||||||| |||||||| |||||    
T  14542573 acccatgttgaacaaatggtttctctcccagaatgttgttttaggtctc 14542621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16051406 - 16051442
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  16051406 gagagaataagaagataatgtgagtatgagagagaaa 16051442  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9395326 - 9395363
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  9395326 gagagaataagaagataatgtgagtatgaaagagaaag 9395363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16121234 - 16121197
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  16121234 gagagaataagaagataatgtaagtatgaaagagaaag 16121197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21506418 - 21506381
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  21506418 gagagaataagaagataatgtgagtatgagagagaaag 21506381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22422232 - 22422195
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  22422232 gagagaataagaagataatgtgagtatgagagagaaag 22422195  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22893950 - 22893913
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22893950 gagagaataagaagataatgtgagtatgaaagagaaag 22893913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22945618 - 22945581
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22945618 gagagaataagaagataatgtgagtatgaaagagaaag 22945581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 46355282 - 46355317
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaa 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  46355282 gagagaataagtagataatgtgagtatgagagagaa 46355317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4577639 - 4577602
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  4577639 gagagaataagaagataatgtgagtatgagagagaaag 4577602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9472502 - 9472539
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  9472502 gagagaataagaagataatgtgagtatgagagagaaag 9472539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37380316 - 37380353
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  37380316 gagagaataagaagataacgtgagtatgaaagagaaag 37380353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39881019 - 39881056
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  39881019 gagagaataagaagataatgtgagtatgagagagaaag 39881056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9096019 - 9095983
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  9096019 gagagaataagaagataatgtgagtatgagagagaaa 9095983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 37775417 - 37775453
Alignment:
Q  2 agagaataagtagataatgtgagtatgaaagagaaag 38  Q
    |||||||||| |||||||||| |||||||||||||||    
T  37775417 agagaataagaagataatgtgtgtatgaaagagaaag 37775453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40756003 - 40755967
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  40756003 gagagaataagaagataatgtgagtatgagagagaaa 40755967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 55996504 - 55996468
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  55996504 gagagaataagaagataatgtgagtatgagagagaaa 55996468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2935500 - 2935537
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  2935500 gagagaataagaagataatgtgagtatgaaagagaaag 2935537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29057730 - 29057693
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  29057730 gagagaataagaagataatgtgagtatgagagagaaag 29057693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35368693 - 35368656
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  35368693 gagagaataagaagataatgtgagtatgagagagaaag 35368656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50745631 - 50745594
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  50745631 gagagaataagaagataatgtgagtatgagagagaaag 50745594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8627939 - 8627903
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  8627939 gagagaataagaagataatgtgagtatgagagagaaa 8627903  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 43220131 - 43220167
Alignment:
Q  2 agagaataagtagataatgtgagtatgaaagagaaag 38  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  43220131 agagaataagaagataatgtgagtatgagagagaaag 43220167  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51032613 - 51032649
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  51032613 gagagaataagaagataatgtgagtatgagagagaaa 51032649  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 3031915 - 3031879
Alignment:
Q  2 agagaataagtagataatgtgagtatgaaagagaaag 38  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3031915 agagaataagaagataatgtgagtatgaaagagaaag 3031879  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18729278 - 18729313
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaa 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18729278 gagagaataagaagataatgtgagtatgaaagagaa 18729313  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7080612 - 7080575
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  7080612 gagagaataagaagataatgtgagtatgagagagaaag 7080575  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20985518 - 20985555
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  20985518 gagagaataagaagataatgtgagtatgagagagaaag 20985555  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 32425028 - 32424996
Alignment:
Q  6 aataagtagataatgtgagtatgaaagagaaag 38  Q
    |||||| ||||||||||||||||||||||||||    
T  32425028 aataagaagataatgtgagtatgaaagagaaag 32424996  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6243116 - 6243079
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  6243116 gagagaataagaagataatgtgagtatgagagagaaag 6243079  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9550396 - 9550433
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  9550396 gagagaataagaagataatgtgagtatgagagagaaag 9550433  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21649157 - 21649194
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  21649157 gagagaataggaagataatgtgagtatgaaagagaaag 21649194  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22836128 - 22836165
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  22836128 gagagaataagaagataatgtgagtatgagagagaaag 22836165  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42716402 - 42716365
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  42716402 gagagaataagaagataatgtgagtatgagagagaaag 42716365  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43590776 - 43590739
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  43590776 gagagaataagaagataatgtgagtatgagagagaaag 43590739  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 7279916 - 7279952
Alignment:
Q  2 agagaataagtagataatgtgagtatgaaagagaaag 38  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  7279916 agagaataagaagataatgtgagtatgagagagaaag 7279952  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32234441 - 32234477
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  32234441 gagagaataagaagataatgtgaatatgaaagagaaa 32234477  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42688509 - 42688473
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  42688509 gagagaataagtagataatatgagtatgagagagaaa 42688473  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17039239 - 17039202
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  17039239 gagagaataagaagataatgtgagtatgagagagaaag 17039202  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40108206 - 40108169
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  40108206 gagagaataagaagataatgtgagtatgagagagaaag 40108169  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16567398 - 16567362
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| | |||||||||||||||||||||||    
T  16567398 gagagaataagaatataatgtgagtatgaaagagaaa 16567362  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16598264 - 16598300
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| | |||||||||||||||||||||||    
T  16598264 gagagaataagaatataatgtgagtatgaaagagaaa 16598300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33465028 - 33465064
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  33465028 gagagaataagaagataatgtgagtatgagagagaaa 33465064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49142506 - 49142542
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  49142506 gagagaataagaagataatgtgagtatgagagagaaa 49142542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49147604 - 49147568
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  49147604 gagagaataagaagataatgtgaatatgaaagagaaa 49147568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11121563 - 11121526
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  11121563 gagagaataagaagataatgtgagtatgagagagaaag 11121526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40240100 - 40240137
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaag 38  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  40240100 gagagaatatgaagataatgtgagtatgaaagagaaag 40240137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37947209 - 37947245
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  37947209 gagagaataagaagataatgtgagtatgatagagaaa 37947245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40118704 - 40118740
Alignment:
Q  1 gagagaataagtagataatgtgagtatgaaagagaaa 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  40118704 gagagaataagaagataatgtgagtatgagagagaaa 40118740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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