View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21351_high_17 (Length: 284)
Name: NF21351_high_17
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 11328344 - 11328120
Alignment:
| Q |
36 |
gcaaattggttggggtattagaggatgaaggaagggaagcacaaaatgaaaaggagattcacattgagaggaaagatgagttcgggagaactttgactcc |
135 |
Q |
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| T |
11328344 |
gcaaattggttggggtattagaggatgaaggaagggaagcacaaaataaaaaggagattcacattgagaggaaagatgagtttgggagaactttgactcc |
11328245 |
T |
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| Q |
136 |
taaggaagcctatcgtatattatctcaaaagttccatggtgtagaacctggcaaaatgaagcaggaaaagcgtaagaagaaatttcatgaagaattgaaa |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11328244 |
taaggaagcctatcgtatattatctcaaaagttccatggtgtagaacctggaaaaatgaagcaggaaaagcgtaagaagaaatttcatgaagaactgaaa |
11328145 |
T |
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| Q |
236 |
ttgaagcaaatgcagagttcagata |
260 |
Q |
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|||||||||||||||| |||||||| |
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| T |
11328144 |
ttgaagcaaatgcagaattcagata |
11328120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 11486365 - 11486141
Alignment:
| Q |
36 |
gcaaattggttggggtattagaggatgaaggaagggaagcacaaaatgaaaaggagattcacattgagaggaaagatgagttcgggagaactttgactcc |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11486365 |
gcaaattggttggggtattagaggatgaaggaagggaagcacaaaataaaaaggagattcacattgagaggaaagatgagtttgggagaactttgactcc |
11486266 |
T |
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| Q |
136 |
taaggaagcctatcgtatattatctcaaaagttccatggtgtagaacctggcaaaatgaagcaggaaaagcgtaagaagaaatttcatgaagaattgaaa |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11486265 |
taaggaagcctatcgtatattatctcaaaagttccatggtgtagaacctggaaaaatgaagcaggaaaagcgtaagaagaaatttcatgaagaactgaaa |
11486166 |
T |
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| Q |
236 |
ttgaagcaaatgcagagttcagata |
260 |
Q |
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|||||||||||||||| |||||||| |
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| T |
11486165 |
ttgaagcaaatgcagaattcagata |
11486141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 37373143 - 37373011
Alignment:
| Q |
128 |
ttgactcctaaggaagcctatcgtatattatctcaaaagttccatggtgtagaacctggcaaaatgaagcaggaaaagcgtaagaagaaatttcatgaag |
227 |
Q |
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||||||||||||||||||| ||| ||| | ||||| |||||||||||| || ||||||||||||||||||||||||||||| ||| ||||| | |||| |
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| T |
37373143 |
ttgactcctaaggaagcctttcggataatttctcataagttccatggtaaaggacctggcaaaatgaagcaggaaaagcgtatgaaacaattttacgaag |
37373044 |
T |
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| Q |
228 |
aattgaaattgaagcaaatgcagagttcagata |
260 |
Q |
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|||||||||||||||||||| ||||||| |||| |
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| T |
37373043 |
aattgaaattgaagcaaatgaagagttcggata |
37373011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 37374304 - 37374215
Alignment:
| Q |
36 |
gcaaattggttggggtattagaggatgaaggaagggaagcacaaaatgaaaaggagattcacattgagaggaaagatgagttcgggagaa |
125 |
Q |
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|||||||||||||| | ||||||||||||||| |||||||| |||| |||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
37374304 |
gcaaattggttgggattgtagaggatgaaggaaaggaagcaccaaataaaaaggagattcacattgagaggacagatgagtttgggagaa |
37374215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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