View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21351_high_21 (Length: 250)

Name: NF21351_high_21
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21351_high_21
NF21351_high_21
[»] chr4 (6 HSPs)
chr4 (18-108)||(35227436-35227526)
chr4 (144-184)||(4859727-4859767)
chr4 (144-184)||(10358321-10358361)
chr4 (144-184)||(14547638-14547678)
chr4 (144-184)||(16996554-16996594)
chr4 (144-184)||(25089679-25089719)
[»] chr8 (6 HSPs)
chr8 (144-184)||(20180450-20180490)
chr8 (144-184)||(25850158-25850198)
chr8 (144-184)||(39937965-39938005)
chr8 (144-184)||(21398284-21398324)
chr8 (144-184)||(21792777-21792817)
chr8 (144-184)||(45118936-45118976)
[»] chr7 (12 HSPs)
chr7 (144-184)||(44373029-44373069)
chr7 (144-184)||(44381885-44381925)
chr7 (147-184)||(19280838-19280875)
chr7 (144-184)||(13700606-13700646)
chr7 (144-184)||(20584339-20584379)
chr7 (144-184)||(36687150-36687190)
chr7 (144-182)||(13151524-13151562)
chr7 (144-182)||(15718973-15719011)
chr7 (144-177)||(32435418-32435451)
chr7 (146-182)||(11065515-11065551)
chr7 (144-184)||(12370384-12370424)
chr7 (144-184)||(36706561-36706601)
[»] chr6 (5 HSPs)
chr6 (144-184)||(24551397-24551437)
chr6 (144-184)||(1642002-1642042)
chr6 (144-184)||(20412695-20412735)
chr6 (144-184)||(27127408-27127448)
chr6 (144-184)||(31732552-31732592)
[»] scaffold1243 (1 HSPs)
scaffold1243 (144-184)||(1122-1162)
[»] scaffold0375 (1 HSPs)
scaffold0375 (144-184)||(10305-10345)
[»] scaffold0321 (1 HSPs)
scaffold0321 (144-184)||(1807-1847)
[»] scaffold0301 (1 HSPs)
scaffold0301 (144-184)||(9925-9965)
[»] scaffold0195 (2 HSPs)
scaffold0195 (144-191)||(8598-8646)
scaffold0195 (144-191)||(13987-14035)
[»] scaffold0107 (1 HSPs)
scaffold0107 (144-184)||(35811-35851)
[»] scaffold0026 (1 HSPs)
scaffold0026 (144-184)||(144903-144943)
[»] scaffold0020 (1 HSPs)
scaffold0020 (144-184)||(141571-141611)
[»] scaffold0016 (1 HSPs)
scaffold0016 (144-184)||(171444-171484)
[»] chr3 (11 HSPs)
chr3 (144-184)||(14440133-14440173)
chr3 (144-184)||(22308568-22308608)
chr3 (144-184)||(41174474-41174514)
chr3 (144-184)||(42328214-42328254)
chr3 (144-184)||(53647804-53647844)
chr3 (146-184)||(44268534-44268572)
chr3 (144-177)||(4852920-4852953)
chr3 (144-177)||(19885730-19885763)
chr3 (144-184)||(5213867-5213907)
chr3 (146-182)||(12507762-12507798)
chr3 (144-184)||(17325896-17325936)
[»] chr2 (11 HSPs)
chr2 (144-184)||(2524566-2524606)
chr2 (144-184)||(24514282-24514322)
chr2 (144-184)||(24669870-24669910)
chr2 (144-184)||(28654528-28654568)
chr2 (144-183)||(25044361-25044400)
chr2 (147-184)||(22253563-22253600)
chr2 (147-184)||(24782854-24782891)
chr2 (144-177)||(36838220-36838253)
chr2 (144-184)||(5033307-5033347)
chr2 (144-184)||(17305523-17305563)
chr2 (144-184)||(24680319-24680359)
[»] chr1 (5 HSPs)
chr1 (144-184)||(8277988-8278028)
chr1 (144-184)||(23086517-23086557)
chr1 (144-184)||(48299955-48299995)
chr1 (144-182)||(4597970-4598008)
chr1 (144-184)||(42910980-42911020)
[»] scaffold0039 (1 HSPs)
scaffold0039 (144-182)||(21784-21822)
[»] scaffold0001 (2 HSPs)
scaffold0001 (144-182)||(31084-31122)
scaffold0001 (144-182)||(36391-36429)
[»] scaffold0051 (1 HSPs)
scaffold0051 (147-184)||(69490-69527)
[»] scaffold0040 (1 HSPs)
scaffold0040 (147-184)||(105246-105283)
[»] scaffold0509 (1 HSPs)
scaffold0509 (144-184)||(10696-10736)
[»] scaffold0434 (1 HSPs)
scaffold0434 (144-184)||(7992-8032)
[»] scaffold0075 (1 HSPs)
scaffold0075 (144-184)||(4225-4265)
[»] scaffold0036 (1 HSPs)
scaffold0036 (144-184)||(79282-79322)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 35227436 - 35227526
Alignment:
Q  18 tttcttcctctgcaaggatactcattacgtgaagcctacatgcgaggatgcatgtgtgggaaaacccaagggcttcaaggcccccgactag 108  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  35227436 tttcttcctccgcaaggatactcattacgtggagcctacatgcgaggatgtatgtgtggggaaacccaagggcttcaaggcccccgactag 35227526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 4859767 - 4859727
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  4859767 tgcataaatcagagtaaaacaactaaacaggatgctacact 4859727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 10358361 - 10358321
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  10358361 tgcataaatcagagtaaaacaactaaacaggatgctacact 10358321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 14547638 - 14547678
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  14547638 tgcataaatcagagtaaaacaactaaacaggatgctacact 14547678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 16996554 - 16996594
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  16996554 tgcataaatcagagtaaaacaactaaacaggatgctacact 16996594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 25089679 - 25089719
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||| |||||||||||||| ||||||    
T  25089679 tgcataaatcagagtaaaaaaactaaacaggatgctacact 25089719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 20180490 - 20180450
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  20180490 tgcataaatcagagtaaaacaactaaacaggatgttacact 20180450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 25850198 - 25850158
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  25850198 tgcataaatcagagtaaaacaactaaacaggatgctacact 25850158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 39938005 - 39937965
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  39938005 tgcataaatcagagtaaaacaactaaacaggatgctacact 39937965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 21398284 - 21398324
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||||||||||| |||||| ||||||    
T  21398284 tgcataaatcagagtaaaacaactaaataggatgctacact 21398324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 21792777 - 21792817
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||||||||||| |||||| ||||||    
T  21792777 tgcataaatcagagtaaaacaactaaataggatgctacact 21792817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 45118976 - 45118936
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  45118976 tgcataaatcagagtaaaacaactaaacatgatgctacact 45118936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 44373029 - 44373069
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  44373029 tgcataaatcagagtaaaacaactaaacaggatgttacact 44373069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 44381885 - 44381925
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  44381885 tgcataaatcagagtaaaacaactaaacaggatgttacact 44381925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 19280838 - 19280875
Alignment:
Q  147 ataaatcagaataaaacaactaaacaggatgttacact 184  Q
    |||||||||| |||||||||||||||||||||||||||    
T  19280838 ataaatcagagtaaaacaactaaacaggatgttacact 19280875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 13700646 - 13700606
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  13700646 tgcataaatcagagtaaaacaactaaacaggatgctacact 13700606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 20584339 - 20584379
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  20584339 tgcataaatcagagtaaaacaactaaacaggatgctacact 20584379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 36687190 - 36687150
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  36687190 tgcataaatcagagtaaaacaactaaacaggatgctacact 36687150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 13151562 - 13151524
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttaca 182  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  13151562 tgcataaatcagagtaaaacaactaaacaggatgctaca 13151524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 15718973 - 15719011
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttaca 182  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  15718973 tgcataaatcagagtaaaacaactaaacaggatgctaca 15719011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 32435451 - 32435418
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatg 177  Q
    ||||||||||||| ||||||||||||||||||||    
T  32435451 tgcataaatcagagtaaaacaactaaacaggatg 32435418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 11065515 - 11065551
Alignment:
Q  146 cataaatcagaataaaacaactaaacaggatgttaca 182  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  11065515 cataaatcagagtaaaacaactaaacaggatgctaca 11065551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 12370384 - 12370424
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||| | |||||||||||||||||||| ||||||    
T  12370384 tgcataaatcatagtaaaacaactaaacaggatgctacact 12370424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 36706601 - 36706561
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||| ||||||||||| ||||||    
T  36706601 tgcataaatcagagtaaaacaattaaacaggatgctacact 36706561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 24551437 - 24551397
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  24551437 tgcataaatcagagtaaaacaactaaacaggatgttacact 24551397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 1642002 - 1642042
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  1642002 tgcataaatcagagtaaaacaactaaacaggatgctacact 1642042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 20412735 - 20412695
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  20412735 tgcataaatcagagtaaaacaactaaacaggatgctacact 20412695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 27127448 - 27127408
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  27127448 tgcataaatcagagtaaaacaactaaacaggatgctacact 27127408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 31732552 - 31732592
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  31732552 tgcataaatcagagtaaaacaagtaaacaggatgttacact 31732592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1243 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1243
Description:

Target: scaffold1243; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 1162 - 1122
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  1162 tgcataaatcagagtaaaacaactaaacaggatgctacact 1122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 10345 - 10305
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  10345 tgcataaatcagagtaaaacaactaaacaggatgctacact 10305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 1847 - 1807
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  1847 tgcataaatcagagtaaaacaactaaacaggatgctacact 1807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 9965 - 9925
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  9965 tgcataaatcagagtaaaacaactaaacaggatgctacact 9925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 8598 - 8646
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttaca-ctctttcaa 191  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||    
T  8598 tgcataaatcagagtaaaacaactaaacaggatgctacacctctttcaa 8646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 13987 - 14035
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttaca-ctctttcaa 191  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||    
T  13987 tgcataaatcagagtaaaacaactaaacaggatgctacacctctttcaa 14035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 35851 - 35811
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  35851 tgcataaatcagagtaaaacaactaaacaggatgctacact 35811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 144903 - 144943
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  144903 tgcataaatcagagtaaaacaactaaacaggatgctacact 144943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 141571 - 141611
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  141571 tgcataaatcagagtaaaacaactaaacaggatgctacact 141611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 171484 - 171444
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  171484 tgcataaatcagagtaaaacaactaaacaggatgctacact 171444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 14440133 - 14440173
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  14440133 tgcataaatcagagtaaaacaactaaacaggatgatacact 14440173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 22308608 - 22308568
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  22308608 tgcataaatcagagtaaaacaactaaacaggatgctacact 22308568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 41174514 - 41174474
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  41174514 tgcataaatcagagtaaaacaactaaacaggatgctacact 41174474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 42328254 - 42328214
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  42328254 tgcataaatcagagtaaaacaactaaacaggatgctacact 42328214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 53647844 - 53647804
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  53647844 tgcataaatcaaagtaaaacaactaaacaggatgttacact 53647804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 44268534 - 44268572
Alignment:
Q  146 cataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  44268534 cataaatcagagtaaaacaactaaacaggatgctacact 44268572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 4852920 - 4852953
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatg 177  Q
    ||||||||||||| ||||||||||||||||||||    
T  4852920 tgcataaatcagagtaaaacaactaaacaggatg 4852953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 19885763 - 19885730
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatg 177  Q
    ||||||||||||| ||||||||||||||||||||    
T  19885763 tgcataaatcagagtaaaacaactaaacaggatg 19885730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 5213867 - 5213907
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||| ||||||| |||||||||||||||||||| ||||||    
T  5213867 tgcatgaatcagagtaaaacaactaaacaggatgctacact 5213907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 12507798 - 12507762
Alignment:
Q  146 cataaatcagaataaaacaactaaacaggatgttaca 182  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  12507798 cataaatcagagtaaaacaactaaacaggatgctaca 12507762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 17325936 - 17325896
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    |||||| |||||| |||||||||||||||||||| ||||||    
T  17325936 tgcatagatcagagtaaaacaactaaacaggatgctacact 17325896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 2524606 - 2524566
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  2524606 tgcataaatcagagtaaaacaactaaacaggatgatacact 2524566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 24514282 - 24514322
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  24514282 tgcataaatcagagtaaaacaactaaacaggatgctacact 24514322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 24669870 - 24669910
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  24669870 tgcataaatcagagtaaaacaactaaacaggatgctacact 24669910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 28654568 - 28654528
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  28654568 tgcataaatcagagtaaaacaactaaacaggatgctacact 28654528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 25044361 - 25044400
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacac 183  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  25044361 tgcataaatcagagtaaaacaactaaacaggatgctacac 25044400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 22253600 - 22253563
Alignment:
Q  147 ataaatcagaataaaacaactaaacaggatgttacact 184  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  22253600 ataaatcagagtaaaacaactaaacaggatgctacact 22253563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 24782891 - 24782854
Alignment:
Q  147 ataaatcagaataaaacaactaaacaggatgttacact 184  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  24782891 ataaatcagagtaaaacaactaaacaggatgctacact 24782854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 36838220 - 36838253
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatg 177  Q
    ||||||||||||| ||||||||||||||||||||    
T  36838220 tgcataaatcagagtaaaacaactaaacaggatg 36838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 5033347 - 5033307
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||  |||||||||||||||||||| ||||||    
T  5033347 tgcataaatcagggtaaaacaactaaacaggatgctacact 5033307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 17305523 - 17305563
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    |||| |||||||| |||||||||||||||||||| ||||||    
T  17305523 tgcaaaaatcagagtaaaacaactaaacaggatgctacact 17305563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 24680319 - 24680359
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  24680319 tgcataaatcagagtaaaacaactaaacatgatgctacact 24680359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 8278028 - 8277988
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  8278028 tgcataaatcagagtaaaacaactaaacaggatgctacact 8277988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 23086517 - 23086557
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  23086517 tgcataaatcagagtaaaacaactaaacaggatgctacact 23086557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 48299955 - 48299995
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  48299955 tgcataaatcagagtaaaacaactaaacaggatgctacact 48299995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 4598008 - 4597970
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttaca 182  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  4598008 tgcataaatcagagtaaaacaactaaacaggatgctaca 4597970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 42910980 - 42911020
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  42910980 tgcataaatcagagtaaaacaactaaacatgatgctacact 42911020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 21822 - 21784
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttaca 182  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  21822 tgcataaatcagagtaaaacaactaaacaggatgctaca 21784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 31084 - 31122
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttaca 182  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  31084 tgcataaatcagagtaaaacaactaaacaggatgctaca 31122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 36391 - 36429
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttaca 182  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  36391 tgcataaatcagagtaaaacaactaaacaggatgctaca 36429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 69527 - 69490
Alignment:
Q  147 ataaatcagaataaaacaactaaacaggatgttacact 184  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  69527 ataaatcagagtaaaacaactaaacaggatgctacact 69490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 105283 - 105246
Alignment:
Q  147 ataaatcagaataaaacaactaaacaggatgttacact 184  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  105283 ataaatcagagtaaaacaactaaacaggatgctacact 105246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 10736 - 10696
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  10736 tgcataaatcagagtaaaacaactaaacatgatgctacact 10696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 8032 - 7992
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  8032 tgcataaatcagagtaaaacaactaaacaagatgctacact 7992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 4265 - 4225
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  4265 tgcataaatcagagtaaaacaactaaacaagatgatacact 4225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 79322 - 79282
Alignment:
Q  144 tgcataaatcagaataaaacaactaaacaggatgttacact 184  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  79322 tgcataaatcagagtaaaacaactaaacaagatgctacact 79282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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