View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21351_high_25 (Length: 235)

Name: NF21351_high_25
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21351_high_25
NF21351_high_25
[»] chr5 (2 HSPs)
chr5 (12-221)||(36819823-36820032)
chr5 (60-124)||(1055885-1055949)
[»] scaffold0695 (1 HSPs)
scaffold0695 (60-128)||(3454-3522)
[»] chr8 (3 HSPs)
chr8 (60-128)||(14092928-14092996)
chr8 (60-119)||(23796897-23796956)
chr8 (60-119)||(32875204-32875263)
[»] chr7 (5 HSPs)
chr7 (60-128)||(43542667-43542735)
chr7 (60-126)||(23595350-23595416)
chr7 (60-128)||(584849-584917)
chr7 (60-124)||(18773651-18773715)
chr7 (60-128)||(33602940-33603008)
[»] chr3 (3 HSPs)
chr3 (60-124)||(28588882-28588946)
chr3 (60-128)||(42880087-42880155)
chr3 (60-125)||(41544338-41544403)
[»] chr2 (1 HSPs)
chr2 (60-130)||(6532035-6532105)
[»] chr4 (2 HSPs)
chr4 (60-125)||(480199-480264)
chr4 (60-129)||(49333865-49333934)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 36820032 - 36819823
Alignment:
Q  12 caaaggtggtgattgaaaactcttagtgattaaaaatcnnnnnnnnnntttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacaca 111  Q
    |||| |||||||||||||||| ||||||||||||||||          | |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  36820032 caaaagtggtgattgaaaacttttagtgattaaaaatcaaagaaattttatagaagaactaaaaccaaaagttgaaatagttatgaggaccaagaacaca 36819933  T
Q  112 tttaacccaaaattaaattggagagatggcttcaaaaataaaatccagttggcttacannnnnnnnagtgatccaccgatttggtagtatgaacatttta 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  36819932 tttaacctaaaattaaattggagagatggcttcaaaaataaaatccagttggcttacatattttttagtgatccaccgatttggtagtatgaacatttta 36819833  T
Q  212 gtgaggaggg 221  Q
    ||||||||||    
T  36819832 gtgaggaggg 36819823  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 1055949 - 1055885
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaat 124  Q
    |||||||| |||||||| ||||||||| ||| |||| || ||||| |||| ||||||||||||||    
T  1055949 tttagagggactaaaacaaaaagttgacatatttataaggaccaaaaacatatttaacccaaaat 1055885  T

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Target: scaffold0695 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 3522 - 3454
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaattaaa 128  Q
    ||||||||||||||||| ||||||||| ||| ||||| | ||||| |||| ||||||||||||| ||||    
T  3522 tttagaggaactaaaacgaaaagttgacatatttatggggaccaaaaacatatttaacccaaaaataaa 3454  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 14092928 - 14092996
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaattaaa 128  Q
    ||||||||||||||||| ||||||||| ||| ||||| | ||||| |||| ||||||||||||| ||||    
T  14092928 tttagaggaactaaaacgaaaagttgacatatttatggggaccaaaaacatatttaacccaaaaataaa 14092996  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 23796897 - 23796956
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaaccc 119  Q
    ||||||||||||||||| ||||||||| ||| |||| || ||||| |||| |||||||||    
T  23796897 tttagaggaactaaaacgaaaagttgacatatttataaggaccaaaaacatatttaaccc 23796956  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 32875263 - 32875204
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaaccc 119  Q
    ||||||||||||||||| ||||||||| ||| |||| || ||||| |||| |||||||||    
T  32875263 tttagaggaactaaaacgaaaagttgacatatttataagaaccaaaaacatatttaaccc 32875204  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 43542735 - 43542667
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaattaaa 128  Q
    |||||||| |||||||| ||||||||  ||| |||| || ||||| |||| ||||||||||||||||||    
T  43542735 tttagagggactaaaacgaaaagttggtatatttataaggaccaaaaacatatttaacccaaaattaaa 43542667  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 23595350 - 23595416
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaatta 126  Q
    |||||||| |||||||| ||||||||| ||| ||||  | ||||| |||| ||||||||||||||||    
T  23595350 tttagagggactaaaacgaaaagttgacatatttatagggaccaaaaacatatttaacccaaaatta 23595416  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 584917 - 584849
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaattaaa 128  Q
    |||||||| |||||||  ||||||| | ||| |||| || ||||| |||| ||||||||||||||||||    
T  584917 tttagagggactaaaatgaaaagttaatatatttataaggaccaaaaacatatttaacccaaaattaaa 584849  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 18773651 - 18773715
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaat 124  Q
    |||||||| |||||||| ||||||||| ||| ||||  | ||||| |||| ||||||||||||||    
T  18773651 tttagagggactaaaacgaaaagttgatatatttatagggaccaaaaacatatttaacccaaaat 18773715  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 33602940 - 33603008
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaattaaa 128  Q
    |||||||| |||||||| ||||||||| ||| ||||  | ||||| |||| ||||||||||| ||||||    
T  33602940 tttagagggactaaaacgaaaagttgacatatttatagggaccaaaaacatatttaacccaatattaaa 33603008  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 28588882 - 28588946
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaat 124  Q
    ||||||||||||||||| ||||||||| ||| ||||  | ||||| |||| ||||||||||||||    
T  28588882 tttagaggaactaaaacgaaaagttgatatatttatagggaccaaaaacatatttaacccaaaat 28588946  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 42880087 - 42880155
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaattaaa 128  Q
    |||||||| |||||||| ||||||||  ||| |||| || ||||| |||| ||||||||||||||||||    
T  42880087 tttagagggactaaaacgaaaagttggtatatttataaggaccaaaaacatatttaacccaaaattaaa 42880155  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 41544338 - 41544403
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaatt 125  Q
    |||||||| |||||||  | ||||||| ||| |||| || |||||||||| |||||||||||||||    
T  41544338 tttagagggactaaaatgagaagttgatatatttataaggaccaagaacatatttaacccaaaatt 41544403  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 6532105 - 6532035
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaattaaatt 130  Q
    |||||||| |||||||| |||| |||| ||| |||| || ||||| |||| ||||||||||||||| ||||    
T  6532105 tttagagggactaaaacaaaaaattgacatatttataaggaccaaaaacatatttaacccaaaatttaatt 6532035  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 480199 - 480264
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaatt 125  Q
    |||||||| |||||||| ||||||||| ||| ||||  | ||||| |||| |||||||||||||||    
T  480199 tttagagggactaaaacgaaaagttgacatatttatagggaccaaaaacatatttaacccaaaatt 480264  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 49333865 - 49333934
Alignment:
Q  60 tttagaggaactaaaaccaaaagttgaaatagttatgagcaccaagaacacatttaacccaaaattaaat 129  Q
    ||||||||||||||||| ||||||||| ||| | || || | ||| |||| |||||||||||||| ||||    
T  49333865 tttagaggaactaaaacgaaaagttgacatattcataaggagcaaaaacatatttaacccaaaataaaat 49333934  T

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