View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21351_high_6 (Length: 451)
Name: NF21351_high_6
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 27080786 - 27080984
Alignment:
| Q |
14 |
atcaaaggcataaattatcttctacatcaaaattggcatgtctgcatcacccacactctctgagaagaaaataattgtaatcattttcttgctaagctat |
113 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27080786 |
atcaaaggcataaaaaatctt-tacatcaaaattggcatgtctgcatcacccacactgtctgagaagaaaataattgtaatcattttcttgctaagctat |
27080884 |
T |
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| Q |
114 |
gcgcttcttccaatattggtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27080885 |
gcgcttcttccaatattggtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag |
27080984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 27148871 - 27148673
Alignment:
| Q |
14 |
atcaaaggcataaattatcttctacatcaaaattggcatgtctgcatcacccacactctctgagaagaaaataattgtaatcattttcttgctaagctat |
113 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27148871 |
atcaaaggcataaaaaatctt-tacatcaaaattggcatgtctgcatcacccacactgtctgagaagaaaataattgtaatcattttcttgctaagctat |
27148773 |
T |
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| Q |
114 |
gcgcttcttccaatattggtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27148772 |
gcgcttcttccaatattggtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag |
27148673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 27081100 - 27081138
Alignment:
| Q |
406 |
gcaattattcgatccttataaacactacccttcttctct |
444 |
Q |
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||||||||| |||||||||||||||| |||||||||||| |
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| T |
27081100 |
gcaattatttgatccttataaacacttcccttcttctct |
27081138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 27148557 - 27148519
Alignment:
| Q |
406 |
gcaattattcgatccttataaacactacccttcttctct |
444 |
Q |
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||||||||| |||||||||||||||| |||||||||||| |
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| T |
27148557 |
gcaattatttgatccttataaacacttcccttcttctct |
27148519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 27080999 - 27081039
Alignment:
| Q |
305 |
atttatactttcctcttttacgttttgtcctttagctttgt |
345 |
Q |
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|||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
27080999 |
atttttactttccttttttactttttgtcctttagctttgt |
27081039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 27148658 - 27148618
Alignment:
| Q |
305 |
atttatactttcctcttttacgttttgtcctttagctttgt |
345 |
Q |
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|||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
27148658 |
atttttactttccttttttactttttgtcctttagctttgt |
27148618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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