View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21351_low_11 (Length: 311)
Name: NF21351_low_11
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 11328645 - 11328352
Alignment:
| Q |
1 |
gtcaagggtcttcacatcgatgaagatgcacgtgaagatgaagatgttatcatgcatgatgatgaagaagcagatgtttcggctaaggaaacgaaagatg |
100 |
Q |
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| T |
11328645 |
gtcaagggtcttcacatcgatgaagatgcacgtgaagatgaagatgttatcatgcatgatgatgaag---cagatgtttcggctaaggaaacgaaagatg |
11328549 |
T |
|
| Q |
101 |
aggctggtgagtggactgaagttaaagaaactcaaaagaacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaagt |
200 |
Q |
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| T |
11328548 |
aggctggtgagtggactgaagttaaagaaactcaaaagaacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaagt |
11328449 |
T |
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| Q |
201 |
tgctctagggaaaggaatgtttggtgcattgaaactgtgtaaagaccaaggaacacttaaagaaaacattgaatggggtggcagaaacacagataag |
297 |
Q |
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| T |
11328448 |
tgctctagggaaaggaatgtttggtgcattgaaactgtgtaaagaccaaggaacacttaaagaaaacattgaatggggtggcagaaacacggataag |
11328352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 11486666 - 11486373
Alignment:
| Q |
1 |
gtcaagggtcttcacatcgatgaagatgcacgtgaagatgaagatgttatcatgcatgatgatgaagaagcagatgtttcggctaaggaaacgaaagatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11486666 |
gtcaagggtcttcacatcgatgaagatgcacgtgaagatgaagatgttatcatgcatgatgatgaag---cagatgtttcggctaaggaaacgaaagatg |
11486570 |
T |
|
| Q |
101 |
aggctggtgagtggactgaagttaaagaaactcaaaagaacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaagt |
200 |
Q |
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| T |
11486569 |
aggctggtgagtggactgaagttaaagaaactcaaaagaacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaagt |
11486470 |
T |
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| Q |
201 |
tgctctagggaaaggaatgtttggtgcattgaaactgtgtaaagaccaaggaacacttaaagaaaacattgaatggggtggcagaaacacagataag |
297 |
Q |
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| T |
11486469 |
tgctctagggaaaggaatgtttggtgcattgaaactgtgtaaagaccaaggaacacttaaagaaaacattgaatggggtggcagaaacacggataag |
11486373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 39 - 289
Target Start/End: Complemental strand, 37374570 - 37374320
Alignment:
| Q |
39 |
tgaagatgttatcatgcatgatgatgaagaagcagatgtttcggctaaggaaacgaaagatgaggctggtgagtggactgaagttaaagaaactcaaaag |
138 |
Q |
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|||||||||| ||||| | ||||| ||||| ||| |||| | | | |||||| ||| || |||||||||| ||||||||||||||| |||||||||| |
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| T |
37374570 |
tgaagatgttttcatggaagatgacgaagaggcacctgttcctgttgaggaaaagaatgacgaggctggtgggtggactgaagttaatgaaactcaaata |
37374471 |
T |
|
| Q |
139 |
aacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaagttgctctagggaaaggaatgtttggtgcattgaaactgt |
238 |
Q |
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| T |
37374470 |
gacgagcaacccaactcagaagacaaggaggagatagttcctgatgaaactatacatgaagttgctgtagggaaaggactgtctggagcattgaaactgc |
37374371 |
T |
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| Q |
239 |
gtaaagaccaaggaacacttaaagaaaacattgaatggggtggcagaaaca |
289 |
Q |
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|||||| | ||||||||||||||||| | ||||||||||||||||||||| |
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| T |
37374370 |
ttaaagatcgaggaacacttaaagaaagcgttgaatggggtggcagaaaca |
37374320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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