View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21351_low_12 (Length: 307)
Name: NF21351_low_12
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 41657793 - 41657501
Alignment:
| Q |
1 |
ctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaatatggcagaaacattttctaaggctccagaatctaaaattttcttggccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41657793 |
ctagatgccacttcacctaaaggtatgttaggtccgatatgcaatccaaatatggcagaaacattttctaaggctccagaatctaaaattttcttggccc |
41657694 |
T |
|
| Q |
101 |
ctccacctccttcttctgctggttgaaaaacaagaacaactgttccctataccaaaaagtaaggaatgatataacagatccataaaaggatggaaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41657693 |
ctccacctccttcttctgctggttgaaaaacaagaacaactgttccctataccaaaaa-taaggaatgatatcacagatccataaaaggatggaaagaaa |
41657595 |
T |
|
| Q |
201 |
aatataatatgcaggagtcatcttgattatttgtttgttacaattaaaacaataatagaatgacgataacatacaa---agttggcgtaatgag |
291 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
41657594 |
aatataatatgcaggagtcatcttgattatgtgtttgttacaattaaaacaataatagaatgacggtaacatacaaattagttggcgtaatgag |
41657501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 43211635 - 43211782
Alignment:
| Q |
1 |
ctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaatatggcagaaacattttctaaggctccagaatctaaaattttcttggccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
43211635 |
ctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaatatggcagagacattttctaaggctccagcatctaaaattttcttagccc |
43211734 |
T |
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| Q |
101 |
ctccacctccttcttctgctggttgaaaaacaagaacaactgttccct |
148 |
Q |
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| T |
43211735 |
cggcacctccttcttctgctggttgaaaaacaagaacaatcgttccct |
43211782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 43226323 - 43226508
Alignment:
| Q |
4 |
gatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaatatggcagaaacattttctaaggctccagaatctaaaattttcttggcccctc |
103 |
Q |
| |
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|||||||||||||||||||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
43226323 |
gatgccacttcacctaaaggtaagttacttaggacatgcaatccaaatatggcagagacattttctaaggctccagtgtctaaaatttgcttagccccag |
43226422 |
T |
|
| Q |
104 |
cacctccttcttctgctggttgaaaaacaagaacaactgttccctataccaaaaagtaaggaatgatataacagatccataaaaggatg |
192 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| | |||||||||||||||| |
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| T |
43226423 |
cacctccttcttctgctggttgaaaaacaagaacaacagttccctatac---aaaataaggaatgatatcatggatccataaaaggatg |
43226508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 41651781 - 41651630
Alignment:
| Q |
1 |
ctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaatatggcagaaacattttctaaggctccagaatctaaaattttcttggccc |
100 |
Q |
| |
|
||||| ||||||||||||||||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
41651781 |
ctagaagccacttcacctaaaggtaagttatttaggacatgcaatccaaatatggcagagacattttctaaggctccagcatctaaaattttcttagccc |
41651682 |
T |
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| Q |
101 |
ctccacctccttcttctgctggttgaaaaacaagaacaactgttccctatac |
152 |
Q |
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| T |
41651681 |
cggcacctccttcttctgctggttgaaaaacaagaacaacagttccctatac |
41651630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 43204612 - 43204800
Alignment:
| Q |
1 |
ctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaatatggcagaaacattttctaaggctccagaatctaaaattttcttggccc |
100 |
Q |
| |
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||||| ||||||||||||| ||||| |||| | |||||||||||||||||||||||| || ||||| ||||| |||| |||||||||||| || |||| |
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| T |
43204612 |
ctagaagccacttcacctagaggtaagttatttaggacatgcaatccaaatatggcagagactttttccaaggcaccagcatctaaaatttttttagccc |
43204711 |
T |
|
| Q |
101 |
ctccacctccttcttctgctggttgaaaaacaagaacaactgttccctataccaaaaagtaaggaatgatataacagatccataaaagga |
190 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||| |||||| |||| ||||| |
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| T |
43204712 |
caccacctccttcttctgctggttgaaaaacaagaactattgttccctataataaaaa-taaggaatgatatcacagatacatagaagga |
43204800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 5071420 - 5071529
Alignment:
| Q |
39 |
atgcaatccaaatatggcagaaacattttctaaggctccagaatctaaaattttcttggcccctccacctccttcttctgctggttgaaaaacaagaaca |
138 |
Q |
| |
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|||||||||||| || |||| ||||||||||| || || | ||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
5071420 |
atgcaatccaaagatagcagtgacattttctaatgccccggcatctaaaattttcttagcccctccgcctccttcctctgctggttggaaaacaagaaca |
5071519 |
T |
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| Q |
139 |
actgttccct |
148 |
Q |
| |
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| ||||||| |
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| T |
5071520 |
atggttccct |
5071529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 25928703 - 25928787
Alignment:
| Q |
105 |
acctccttcttctgctggttgaaaaacaagaacaactgttccctataccaaaaagtaaggaatgatataacagatccataaaaggatg |
192 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||| ||| ||| ||||||||||||| | |||||||||||||||| |
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| T |
25928703 |
acctccttcttcggctggttgaaaaacaagaacaacatttccctgtac---aaaataaggaatgatatcatggatccataaaaggatg |
25928787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 25928633 - 25928702
Alignment:
| Q |
53 |
tggcagaaacattttctaaggctccagaatctaaaattttcttggcccctccacctccttcttctgctgg |
122 |
Q |
| |
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||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||||||||||||||||| |
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| T |
25928633 |
tggcagagacattttccaagattccagggtctaaaattttcttagccccaacacctccttcttctgctgg |
25928702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 9419089 - 9419008
Alignment:
| Q |
59 |
aaacattttctaaggctccagaatctaaaattttcttggcccctccacctccttcttctgctggttgaaaaacaagaacaac |
140 |
Q |
| |
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||||||||||||| |||| ||||||||| |||||||| || ||| |||||||||| |||||||| || |||||||||||||| |
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| T |
9419089 |
aaacattttctaacgctctagaatctaatattttcttagctcctacacctccttcgtctgctggatggaaaacaagaacaac |
9419008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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