View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21351_low_14 (Length: 298)
Name: NF21351_low_14
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 9360732 - 9361000
Alignment:
| Q |
20 |
acttcatggtaacaaatggtcacacattagcaaattctttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctaggaagcaa |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
9360732 |
acttcatggtaacaaatggtcacacatttgcaaattctttcctggaaggacagacaatgcactgaagaatcattttcatgtgattatggctaggaagcaa |
9360831 |
T |
|
| Q |
120 |
agggaactattatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaataataatgtagctagcaaatcagcaatcacaagtccctttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9360832 |
agggaactattatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaataataatgtagctagcaaatcagcaatcacaagtccctttg |
9360931 |
T |
|
| Q |
220 |
atgaatctaactcaacttgcaccaatctcaacctcactactaggcctttgcttaattaccatgcctatg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9360932 |
atgaatctaactcaacttgcaccaatctcaacctcactactaggcctttgcttaattaccatgcctatg |
9361000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 9348159 - 9348317
Alignment:
| Q |
20 |
acttcatggtaacaaatggtcacacattagcaaattctttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctaggaagcaa |
119 |
Q |
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||||||||||| ||||||| |||||||| |||| ||||| ||||||| ||| |||||||| ||||||||||| |||||||||| |||||||| |||| |
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| T |
9348159 |
acttcatggtaccaaatgggcacacatttccaaacattttccaggaaggagagacaatgcactaaagaatcattaccatgtgatcaaggctaggaggcaa |
9348258 |
T |
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| Q |
120 |
agggaactattatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaa |
178 |
Q |
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| T |
9348259 |
agggaactcctatcatctattgcaagaaaggaaaagctaacatatgaaatcccagcaaa |
9348317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 9356184 - 9356342
Alignment:
| Q |
20 |
acttcatggtaacaaatggtcacacattagcaaattctttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctaggaagcaa |
119 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||| ||||| ||||||| ||| |||||||| ||||||||||| |||||||||| |||||||| |||| |
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| T |
9356184 |
acttcatggtaccaaatgggcacacatttccaaacattttccaggaaggagagacaatgcactaaagaatcattaccatgtgatcaaggctaggaggcaa |
9356283 |
T |
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| Q |
120 |
agggaactattatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaa |
178 |
Q |
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|||||||| ||||||||||| |||||||| ||||||||||| | ||||||||||||| |
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| T |
9356284 |
agggaactcctatcatctattgcaagaaaggaaaagctaacatatgaaatcccagcaaa |
9356342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 33825709 - 33825654
Alignment:
| Q |
57 |
tttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctag |
112 |
Q |
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||||| || ||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
33825709 |
tttccagggaggacagataatgcagtgaagaatcattggcatgtgatcatggctag |
33825654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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