View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21351_low_2 (Length: 633)

Name: NF21351_low_2
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21351_low_2
NF21351_low_2
[»] chr8 (6 HSPs)
chr8 (79-378)||(28383707-28384014)
chr8 (431-615)||(28383461-28383654)
chr8 (167-262)||(25172693-25172788)
chr8 (203-260)||(11927083-11927140)
chr8 (204-256)||(4298887-4298939)
chr8 (583-615)||(28391588-28391620)
[»] chr4 (2 HSPs)
chr4 (205-256)||(21720508-21720559)
chr4 (204-262)||(44081572-44081630)
[»] chr7 (2 HSPs)
chr7 (204-264)||(6028631-6028691)
chr7 (206-267)||(15902830-15902891)
[»] scaffold0037 (1 HSPs)
scaffold0037 (195-237)||(32603-32645)
[»] chr2 (2 HSPs)
chr2 (203-261)||(30527591-30527649)
chr2 (206-259)||(20539672-20539725)
[»] chr1 (1 HSPs)
chr1 (179-249)||(28460749-28460819)
[»] chr6 (1 HSPs)
chr6 (204-261)||(32320665-32320722)
[»] chr5 (1 HSPs)
chr5 (206-255)||(23012410-23012459)
[»] chr3 (1 HSPs)
chr3 (204-260)||(15796291-15796347)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 5e-76; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 79 - 378
Target Start/End: Complemental strand, 28384014 - 28383707
Alignment:
Q  79 cagatacagtacgtaaaacatttttacgtttacatcaaccatgtatataac------atttttacacggttatgaactacggataccgatgcgaatatta 172  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||      |||  ||||||||||||||  |||||||| |||||||| | ||    
T  28384014 cagatacagtacgtaaaacatttttacgtttacaacaaccatgtatataacgttcaaattagtacacggttatgaagcacggatactgatgcgaacacta 28383915  T
Q  173 gatatgacacagatattgatgtatcaacattgttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtgtcagtatcaaaaa 272  Q
    |||| || |  || | | ||| | |||||   |||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||| |||||||||||    
T  28383914 gatacgatatggacactaatgcaccaacaccattaataatttgataaaatcacgtaatttattgttattacatgtgtcagtgtcgtgttagtatcaaaaa 28383815  T
Q  273 atcacataatttagtgttattattatgactactcatttcacat-agtacttggcaaca-ttatttgtacactctttaaaatttgacacgttcacattcac 370  Q
    ||||||||||||||||||| | ||  ||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  28383814 atcacataatttagtgttactgttgcgactactcatttcacatcagtacttggcaacagttatttgttcactcttcaaaatttgacacgttcacattcac 28383715  T
Q  371 gtgttgtg 378  Q
    ||||||||    
T  28383714 gtgttgtg 28383707  T

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Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 431 - 615
Target Start/End: Complemental strand, 28383654 - 28383461
Alignment:
Q  431 atgaaaacaagaaaaaaggaagtaactaggccttaaaagtatctgcctnnnnnnnn----------ggccttaaaagtattaaattttatttacttacat 520  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||                  |||||||||||||||||||||||||| |||||||    
T  28383654 atgaaaacaagaaaaaaggaagtaactaggccttaaaagtatctccctcaaaaaaaaaaaaaaaaaggccttaaaagtattaaattttattttcttacat 28383555  T
Q  521 tttaaaaagccccttaactaattgagtttgaatgaaaacagttttagttacctatgttgattgagtttgaaaacatatctaatttgatcaacctc 615  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28383554 tttaaaaagccc-ttaactaattgagtttgaatgaaaacagttttagttacctatgttgattgagtttgaaaacatatctaatttgatcaacctc 28383461  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 25172788 - 25172693
Alignment:
Q  167 atattagatatgacacagatattgatgtatcaacattgttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtgtca 262  Q
    |||||||||||||||| |||| |||| |    ||| || ||||||||||||||||| |  || |||||||| |||| || ||||||||||||||||    
T  25172788 atattagatatgacacggatactgatatgctgacactgctaataatttgataaaattacatattttaatgtaattatatgtgtcggtgtcgtgtca 25172693  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 11927140 - 11927083
Alignment:
Q  203 tgttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtgt 260  Q
    ||||||||||||||||||||||  ||||| | ||| |||| || ||||||||||||||    
T  11927140 tgttaataatttgataaaatcacataattcagtgtaattatatgtgtcggtgtcgtgt 11927083  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 4298939 - 4298887
Alignment:
Q  204 gttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtc 256  Q
    ||||||||||||| |||||||  ||||||||||| ||||||  ||||||||||    
T  4298939 gttaataatttgaaaaaatcacataatttaatgtaattacaagtgtcggtgtc 4298887  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 583 - 615
Target Start/End: Complemental strand, 28391620 - 28391588
Alignment:
Q  583 gagtttgaaaacatatctaatttgatcaacctc 615  Q
    ||||||||||||| |||||||||||||||||||    
T  28391620 gagtttgaaaacaaatctaatttgatcaacctc 28391588  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 21720559 - 21720508
Alignment:
Q  205 ttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtc 256  Q
    ||||||||||||||||||||| ||||||||||| | || |||||||||||||    
T  21720559 ttaataatttgataaaatcatataatttaatgtaactatatatgtcggtgtc 21720508  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 44081630 - 44081572
Alignment:
Q  204 gttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtgtca 262  Q
    ||||||||||||| |||||||| ||||||||||| |||| || |||| ||| |||||||    
T  44081630 gttaataatttgaaaaaatcatataatttaatgtaattatatgtgtcagtgccgtgtca 44081572  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 6028631 - 6028691
Alignment:
Q  204 gttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtgtcagt 264  Q
    ||||||||||||| || || |  ||||||||||| |||||| |||||||||||||||||||    
T  6028631 gttaataatttgaaaatataacataatttaatgtaattacaaatgtcggtgtcgtgtcagt 6028691  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 15902830 - 15902891
Alignment:
Q  206 taataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtgtcagtatc 267  Q
    |||||||||||||||||||  ||||||| ||| |||| || ||||||||| ||||| |||||    
T  15902830 taataatttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggtatc 15902891  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 32645 - 32603
Alignment:
Q  195 atcaacattgttaataatttgataaaatcatgtaatttaatgt 237  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||    
T  32645 atcaacattgataataatttgagaaaatgatgtaatttaatgt 32603  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 30527649 - 30527591
Alignment:
Q  203 tgttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtgtc 261  Q
    |||||||||||||| |||||||| ||||||| ||| |||| || ||||||| |||||||    
T  30527649 tgttaataatttgagaaaatcatataatttagtgtaattatatgtgtcggtatcgtgtc 30527591  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 20539725 - 20539672
Alignment:
Q  206 taataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtg 259  Q
    ||||||||||| |||||||| ||||||| ||| ||||||  |||||||||||||    
T  20539725 taataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcgtg 20539672  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 28460749 - 28460819
Alignment:
Q  179 acacagatattgatgtatcaacattgttaataatttgataaaatcatgtaatttaatgttattacatatgt 249  Q
    |||| ||||||||| |||| |||||||||||||||| | |||||||  ||||| ||||| |||| ||||||    
T  28460749 acacggatattgatatatcgacattgttaataatttcagaaaatcaaataattaaatgtaattatatatgt 28460819  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 32320722 - 32320665
Alignment:
Q  204 gttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtgtc 261  Q
    |||||||||||||||||||||  ||||| ||||| |||| || | |||||||||||||    
T  32320722 gttaataatttgataaaatcacataattcaatgtcattatatgtatcggtgtcgtgtc 32320665  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 23012459 - 23012410
Alignment:
Q  206 taataatttgataaaatcatgtaatttaatgttattacatatgtcggtgt 255  Q
    ||||||||||| |||||||| ||||||||||| |||| || |||||||||    
T  23012459 taataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgt 23012410  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 15796347 - 15796291
Alignment:
Q  204 gttaataatttgataaaatcatgtaatttaatgttattacatatgtcggtgtcgtgt 260  Q
    ||||||||||||| |||||||| ||||| | ||| ||||||  ||||||||||||||    
T  15796347 gttaataatttgaaaaaatcatataattcagtgtaattacaattgtcggtgtcgtgt 15796291  T

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