View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21351_low_28 (Length: 215)
Name: NF21351_low_28
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 9213238 - 9213058
Alignment:
| Q |
15 |
agcagagagacaaaggagagagaaactaaaccatagattttatgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatca |
114 |
Q |
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| T |
9213238 |
agcagagagacaaaggagagagaaactaaaccatagattttacgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatca |
9213139 |
T |
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| Q |
115 |
gatgcagtggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtg |
195 |
Q |
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| T |
9213138 |
gatgcagtggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtg |
9213058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 9194792 - 9194970
Alignment:
| Q |
15 |
agcagagagacaaaggagagagaaactaaaccatagattttatgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |
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| T |
9194792 |
agcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttatct |
9194891 |
T |
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| Q |
115 |
gatgcagtggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaagg |
193 |
Q |
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| T |
9194892 |
gatgcagtagattacatcaatgagttaaaagcaaagatcgaagatttaaaattagggcaacaaaaggaatcgaaaaagg |
9194970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 28081131 - 28081217
Alignment:
| Q |
15 |
agcagagagacaaaggagagagaaactaaaccatagattttatgctttaagatctgtggttccaaatgtttcaaagatggataaagc |
101 |
Q |
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| T |
28081131 |
agcagagagacaaagaagagaaaagcttaaccaaaaattctatgctctacgtgctgtggttccaaatgtttctaagatggacaaagc |
28081217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 17370995 - 17371053
Alignment:
| Q |
122 |
tggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaag |
180 |
Q |
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| T |
17370995 |
tggattacatcaatgagttgaaagcaaagattgaaaatttagaattagtgcaacaaaag |
17371053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 24748745 - 24748802
Alignment:
| Q |
123 |
ggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaag |
180 |
Q |
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| T |
24748745 |
ggattacatctatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
24748802 |
T |
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