View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21351_low_29 (Length: 210)
Name: NF21351_low_29
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 22687642 - 22687801
Alignment:
| Q |
15 |
cataggtttaacagtgtgtaatgtcaatttaaaattactttcaatgccattaatagagtttactatagcaaatgaaattggtaatgttttaacttaccta |
114 |
Q |
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| T |
22687642 |
cataggtttaacagtgtgtaatgtcaatttaaaattactttcaatgccattaatagagtttactatagcaaatgaaattaatgatgttttgacttaccca |
22687741 |
T |
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| Q |
115 |
actggaacaaaataatttagcactt-gattagaatttcattgataaaaattcagatatca |
173 |
Q |
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| T |
22687742 |
actagaacaatataattttgcacttggattagattttcattgaaaaaaattcagatatca |
22687801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 11550340 - 11550278
Alignment:
| Q |
61 |
ccattaatagagtttactatagcaaatgaaattggtaatgttttaacttacctaactggaacaa |
124 |
Q |
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| T |
11550340 |
ccattaatagagtttactataacaaatgaaagtggtaatgtttt-agttccctaactggaacaa |
11550278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 11545653 - 11545590
Alignment:
| Q |
61 |
ccattaatagagtttactatagcaaatgaaattggtaatgttttaacttacctaactggaacaa |
124 |
Q |
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| T |
11545653 |
ccattaatagattttactataacaaatgaaagtggtgatgttttagatttcccaactggaacaa |
11545590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 11562916 - 11562980
Alignment:
| Q |
44 |
taaaattactttcaatgcca---ttaatagagtttactatagcaaatgaaattggtaatgtttta |
105 |
Q |
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| T |
11562916 |
taaaataactttcaatgccaccattaatagattttactataacaaatgaaagtggtgatgtttta |
11562980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 27472390 - 27472321
Alignment:
| Q |
15 |
cataggtttaacagtgtgtaatgtcaatttaaaattactttcaatgccattaatagagtttactatagca |
84 |
Q |
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| T |
27472390 |
cataagtttaacagtgtgtaatgtcaatttaaaattactttcaatgccattaatagagtttactatagca |
27472321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 27472325 - 27472263
Alignment:
| Q |
132 |
tagcacttgattagaatttcattgataaaaattcagatatcaatttgatatgaaggaaagatc |
194 |
Q |
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| T |
27472325 |
tagcacttgattaaaatttcattgataaaaattcagatatcgatttgatatgaaggaaagatc |
27472263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 19859716 - 19859586
Alignment:
| Q |
40 |
aatttaaaattactttcaatgccattaatagagtttactatagcaaatgaaattggtaatgttttaacttacctaactggaacaaaataatttagcactt |
139 |
Q |
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| T |
19859716 |
aattttaaatcactttcaatgccactaatggagtttac-atagaaaatgaaaatggttatgttctagctttcccaaatggaacaatgtaagtcagcacat |
19859618 |
T |
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| Q |
140 |
gattagaatttcattgataaaaattcagatat |
171 |
Q |
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| T |
19859617 |
gatatcaatttaattgatataaattcagatat |
19859586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 34407717 - 34407753
Alignment:
| Q |
69 |
agagtttactatagcaaatgaaattggtaatgtttta |
105 |
Q |
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| T |
34407717 |
agagttcactatggcaaatgaaattggtaatgtttta |
34407753 |
T |
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