View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21351_low_3 (Length: 624)
Name: NF21351_low_3
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 199 - 604
Target Start/End: Complemental strand, 10724719 - 10724312
Alignment:
| Q |
199 |
tgatgatggctattatagtttatacatatatgtatataccttactgtatgacatacttggttattgaatatttgtttgtatatatccagttgtgcctgtg |
298 |
Q |
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| T |
10724719 |
tgatgatggctattatagtttatacatatatgtatataccttactgtatgacatacttggttattgaatatttgtttgtatatatccagttgtgcctgtg |
10724620 |
T |
|
| Q |
299 |
tttaactagtaatgtgttacatctaacggattatacttttctgtgcagcaatttctgaaagatatactgaaagatctttgtgtctacaataacaaaggaa |
398 |
Q |
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| T |
10724619 |
tttaactagtaatgtgttacatctaacggattatacttttctgtgcagcaatttctgaaagatatactgaaagatctttgtgtctacaataacaaaggaa |
10724520 |
T |
|
| Q |
399 |
ctaatcaaggcacctatgagctgaagcctgaatacagaaaaactggcgattagctgcaaataccaatgctcataaaatactaattcaaatcattttttca |
498 |
Q |
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| T |
10724519 |
ctaatcaaggcacctatgagctgaagcctgaatacagaaaaactggcgattagctgcaaataccaatgctcataaaatactaattcaaatcattttttca |
10724420 |
T |
|
| Q |
499 |
tttactttgatcgagttgtgaaatggagcggcgtgcattttattgatgtttttaatgactgtatcatcacaaggtttgagtgaatgata--accccgata |
596 |
Q |
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| T |
10724419 |
tttactttgatcgagttgtgaaatggagcggcgtgcattttattgatgtttttaatgactgtatcatcacaaggtttgagtgaatgataacaccccgata |
10724320 |
T |
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| Q |
597 |
atgttggt |
604 |
Q |
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| T |
10724319 |
atgttggt |
10724312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 10724938 - 10724770
Alignment:
| Q |
32 |
tatcgttgttacataaatcactttcattttctcaaattactgttggtgccaacatatgagtatctatgtttgtgtcagtgtttcatagactccaattgct |
131 |
Q |
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| T |
10724938 |
tatcgttgttacataaatcactttcattttctcaaattactattggtgtcaacatatcagtatctatgtttgtctcggtgtttcatagactccaattgct |
10724839 |
T |
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| Q |
132 |
tcaagtatatgtaaaacatgaatctatggttaatgctcatagacccatttgattatatttatgcaattga |
201 |
Q |
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| T |
10724838 |
tcaagtatacgt-aaacatgaatctatggttaatgctcgtagacccatttgattatatttatgcaattga |
10724770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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