View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21351_low_8 (Length: 355)
Name: NF21351_low_8
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_low_8 |
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| [»] scaffold1113 (1 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 32712101 - 32711906
Alignment:
| Q |
1 |
ttaagttcaggtagtggtaggcctccatgatgaccaaatattctttgaatcatgtctatcaattctcgatgcgttaatttaaggttttctttaatacgct |
100 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
32712101 |
ttaaattcaggtagtggtaggcctccatgattaccaaatattctttgaatcatgtctatcaattcttgatgcgttaatttaaggttttctttaatacact |
32712002 |
T |
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| Q |
101 |
ctacaaatacattgataaacaaagaacccaaagaaccttcggttgacaattcatccagttgggatgatgtgaacaacacaactttgccgtgggcta |
196 |
Q |
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| T |
32712001 |
ctacaaatacattgataaacaaagaacccaaagaaccttcgattgacaattcatccagttgggatgatgtgaacaacacaactttgccgtgggcta |
32711906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 32710555 - 32710712
Alignment:
| Q |
36 |
aaatattctttgaatcatgtctatcaattctcgatgcgttaatttaaggttttctttaatacgctctacaaatacattgataaacaaagaacccaaagaa |
135 |
Q |
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| T |
32710555 |
aaatattctttggatcatgtctatcaattcttaatgcattattttagggttttttttaacacaatctataaatacattggtaaacacagaacccaaagaa |
32710654 |
T |
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| Q |
136 |
ccttcggttgacaattcatccagttgggatga----tgtgaacaacacaactttgccg |
189 |
Q |
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| T |
32710655 |
cttttggttgaaagttcatccaattgagatgatgtttgtgaacaacacaactttgccg |
32710712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 215 - 338
Target Start/End: Complemental strand, 32714723 - 32714601
Alignment:
| Q |
215 |
tctgtttcttggattcaccaaacaataattcaattgatgtaagtgnnnnnnnnntatccataacccttgctagatgaaagtgtgatactgctggaaactg |
314 |
Q |
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| T |
32714723 |
tctgtttcttggattcaccaaacaatgattcaattgatgtaagtgaaaaaaaca-atccataatccttgcaagatgtaagtgtgatgctgctagaaactg |
32714625 |
T |
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| Q |
315 |
gcaccgaacaaaaacagattgcac |
338 |
Q |
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|||| ||||| ||||||||||||| |
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| T |
32714624 |
gcactgaacagaaacagattgcac |
32714601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 32676595 - 32676724
Alignment:
| Q |
57 |
tatcaattctcgatgcgttaatttaaggttttctttaatacgctctacaaatacattgataaacaaagaacccaaagaaccttcggttgacaattcatcc |
156 |
Q |
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| T |
32676595 |
tatcaattgttgatgcgttgtttgaaggttttgtttaacacaatttacaaacacattggtaaacaaagatcccaaagaacctccggttgactcttcatcc |
32676694 |
T |
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| Q |
157 |
agttgggatgatgtgaacaacacaactttg |
186 |
Q |
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| T |
32676695 |
tatttggatgatgcatacaacacaactttg |
32676724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 32677946 - 32677817
Alignment:
| Q |
57 |
tatcaattctcgatgcgttaatttaaggttttctttaatacgctctacaaatacattgataaacaaagaacccaaagaaccttcggttgacaattcatcc |
156 |
Q |
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|||||||| | |||||||| || |||||||| ||||| || | |||||| |||||| |||||||||| |||||||||||| | |||||| ||||||| |
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| T |
32677946 |
tatcaattgttgatgcgttgtttgaaggttttgtttaacacaatttacaaacacattggtaaacaaagatcccaaagaacctccagttgactcttcatcc |
32677847 |
T |
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| Q |
157 |
agttgggatgatgtgaacaacacaactttg |
186 |
Q |
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||| |||||||| |||||||||||||| |
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| T |
32677846 |
tgtttggatgatgcatacaacacaactttg |
32677817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 32692568 - 32692534
Alignment:
| Q |
225 |
ggattcaccaaacaataattcaattgatgtaagtg |
259 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32692568 |
ggattcaccaaacaataattcaattgatgtaagtg |
32692534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 338
Target Start/End: Original strand, 1125 - 1238
Alignment:
| Q |
224 |
tggattcaccaaacaataattcaattgatgtaagtgnnnnnnnnntatccataacccttgctagatgaaagtgtgatactgctggaaactggcaccgaac |
323 |
Q |
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| T |
1125 |
tggattcaccaaacaataattcaattgatgtaagtgaaaaaaaa-tatccataacccttgctagatgcaagtgtgatactgctggaaactggcactgaac |
1223 |
T |
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| Q |
324 |
aaaaacagattgcac |
338 |
Q |
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||||||||||||||| |
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| T |
1224 |
aaaaacagattgcac |
1238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 2411 - 2379
Alignment:
| Q |
306 |
tggaaactggcaccgaacaaaaacagattgcac |
338 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
2411 |
tggaaactggcactgaacaaaaacagattgcac |
2379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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