View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21351_low_9 (Length: 343)
Name: NF21351_low_9
Description: NF21351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21351_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 52387571 - 52387714
Alignment:
| Q |
1 |
ttacccattaaatatttgtattttcttattatagccaactccaatatataaataaatggtttagcgtatttacttggcaaattaataattaattttcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52387571 |
ttacccattaaatatttgtattttcttattatagccaactccaatatataaataaatggtttagcgtatttatttggcaaattaataattaattttcaga |
52387670 |
T |
|
| Q |
101 |
tgcaaaaagaagaaattgttggcagttattagcagagtttaatt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52387671 |
tgcaaaaagaagaaattgttggcagttattaagagagtttaatt |
52387714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 140 - 303
Target Start/End: Original strand, 52391549 - 52391713
Alignment:
| Q |
140 |
taattcatagtatatgctagtttgaacctc-gaatnnnnnnnnnncggtaccaggttttagaaaccgcagggaattcgttccattgttttcaaagtctgt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52391549 |
taattcatagtatatgctagtttgaacctctgaataaaaaaaaaccggtaccaggttttagaaaccgcagggaattcgttccattgttttcaaagtctgt |
52391648 |
T |
|
| Q |
239 |
ggactgcctgaacccttaaaatattaattaatttgtctttttattgattcatatccaaagtccaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52391649 |
ggactgcctgaacccttaaaatattaattaatttgtctttttattcattcatatccaaagtccaa |
52391713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University