View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21352_high_10 (Length: 262)
Name: NF21352_high_10
Description: NF21352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21352_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 37604485 - 37604733
Alignment:
| Q |
1 |
agtctcatatatgcgaagggagtacacccctcaacaaactccatnnnnnnnctttgatccgttgaggtatgtgcagattccacattctcatccaatctcc |
100 |
Q |
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| T |
37604485 |
agtcttatatatgcgaagggagaacacccctcaacaacctccataaaaaaactttgatccgttgaggtatgtgcagattccacattctcgtccaatctcc |
37604584 |
T |
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| Q |
101 |
cggcattctatactccacattatcaatgagagtttccatatcatacatgtatgcagacttcactgtataatgccctttgttaatgaatttccatattaac |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37604585 |
cggcattctatactccacattatgaatgagagtttccatatcatacatgtatgcagacttcgctgtataatgccctttgttaatgaatttccatattaac |
37604684 |
T |
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| Q |
201 |
ttatctgctccgtctgaattggttaatgctaagttgcggatttcatctc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37604685 |
ttatctgctccgtctgaattggttaatgctaagttgcggatttcttctc |
37604733 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 8178921 - 8178980
Alignment:
| Q |
52 |
ctttgatccgttgaggtatgtgcagattccacattctcatccaatctcccggcattctat |
111 |
Q |
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||||||||| ||||||||| || ||||||||||||||||||||||| |||| || ||||| |
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| T |
8178921 |
ctttgatcctttgaggtatatgaagattccacattctcatccaatcacccgacactctat |
8178980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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