View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21352_high_13 (Length: 219)
Name: NF21352_high_13
Description: NF21352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21352_high_13 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 39705624 - 39705430
Alignment:
| Q |
12 |
aagcaaaggatgtttgtgtgtgtttgtgatttaagagtaagaaatgacacattgaagttgggtgtgaacgggtcattttatagccaatttttgtgtctgc |
111 |
Q |
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| T |
39705624 |
aagcaaaggatgtttgtgtgtgtttgtgatttaagagtaagaaatgacacattgaagttgggtgtgaacgggtcattttatagccaatttttgtgtctgc |
39705525 |
T |
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| Q |
112 |
atattttccctctctttttgtgatttggcttagaaaaccaaccggtgctatctttttcaaac------attgataatttactggattgagagatt |
200 |
Q |
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| T |
39705524 |
atattttccctctctttttgtgatttggcttagaaaaccaaccggtgctatctttttcaaacgttgtaattgataatttactggattgagagatt |
39705430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 49063481 - 49063348
Alignment:
| Q |
40 |
atttaagagtaagaaatgacacattgaagttgggtgtgaacgggtcattt--tatagccaatttttgtgtctgcatattttccctctctttttgtgattt |
137 |
Q |
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| T |
49063481 |
attttagagtaagaaataacacattgaagttgggtgtgtaggggtcattttatatagccacattttgtg--tgtatattttttgtcttgcattgtgattt |
49063384 |
T |
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| Q |
138 |
ggcttagaaaaccaaccggtgctatctttttcaaac |
173 |
Q |
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| T |
49063383 |
ggcttagaaaaccaacccgtgccatctttttcaaac |
49063348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 49048447 - 49048366
Alignment:
| Q |
28 |
tgtgtgtttgtgatttaagagtaagaaatgacacattgaagttgggtgtgaacgggtcattt--tatagccaatttttgtgt |
107 |
Q |
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| T |
49048447 |
tgtgtgtttgttattttagagtaagaaatgacacattaaaattgggtgtggaggggtctttttatatagtcaatttttgtgt |
49048366 |
T |
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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 9757983 - 9758047
Alignment:
| Q |
29 |
gtgtgtttgtgatttaagagtaagaaatgacacattgaagttgggtgtgaacgggtcattttata |
93 |
Q |
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| T |
9757983 |
gtgtgtttgttatcttagagtaagaaatgagacattgaagttgggtgtgaaggggtcattttata |
9758047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 30496700 - 30496757
Alignment:
| Q |
49 |
taagaaatgacacattgaagttgggtgtgaacgggtcattttatagccaatttttgtg |
106 |
Q |
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| T |
30496700 |
taagaaatgacacattgtaatttggtgtgaaggggtcattttatagacaaattttgtg |
30496757 |
T |
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Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 38781 - 38728
Alignment:
| Q |
45 |
agagtaagaaatgacacattgaagttgggtgtgaacgggtcattttatagccaa |
98 |
Q |
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| T |
38781 |
agagtaagaaatggcccattgaagttgggtgtgaaggggtcattttatatccaa |
38728 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 22651854 - 22651773
Alignment:
| Q |
28 |
tgtgtgtttgtgatttaagagtaagaaatgacacattgaagttgggtgtgaacgggtcattt--tatagccaatttttgtgt |
107 |
Q |
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| T |
22651854 |
tgtgtgtttgatattttagagtacaaaatgacacattgaaattgggtgtgaaggggtgattttgtatagtcaatttttgtgt |
22651773 |
T |
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