View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21352_high_2 (Length: 497)
Name: NF21352_high_2
Description: NF21352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21352_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 39583777 - 39584236
Alignment:
| Q |
18 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactnnnnnnn-gtgaaatcccaccgttgaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
39583777 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactaaaaaaaagtgaaatcccaccattgaga |
39583876 |
T |
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| Q |
117 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttctttctcttacatgttttcatcaacttttagataaaccttgttga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39583877 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttccttctcttacatgttttcatcaacttttagataaaccttgttga |
39583976 |
T |
|
| Q |
217 |
tgacatttgaacgagctttacacatggcctccaagggaattaacttcggagtagtggctccttttccttcagtcatatcaatttcttcctcatttattct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39583977 |
tgacatttgaacgagctttacacatggcctccaagggaattagcttcggagtagtggctccttttccttcagtcatatcaatttcttcctcacttattct |
39584076 |
T |
|
| Q |
317 |
tttccaatcaaaacattgtataagtaatgccaaagttaaactaactgtacgttgccctaagtttgctccaggacaagcccttcttcccaatccaaatgga |
416 |
Q |
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| T |
39584077 |
tttccaatcaaaacattggataagtaatgccaaagttaaactaactgtacgttgccctaagtttgctccaggacaagcccttcttcccaatccaaatgga |
39584176 |
T |
|
| Q |
417 |
atcaacttatcagcttctccttctttgtcaaatctctctggcttgaattgtgttgggtca |
476 |
Q |
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| T |
39584177 |
atcaacttatcagcttctccttctttgtcaaatctctctggcttgaattgtgttgggtca |
39584236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 182 - 331
Target Start/End: Original strand, 39572566 - 39572713
Alignment:
| Q |
182 |
catgttttcatcaacttttagataaaccttgttgatgacatttgaacgagctttacacatggcctccaagggaattaacttcggagtagtggctcctttt |
281 |
Q |
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|||||||||| | |||||||| |||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||||||||| |||||||| |
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| T |
39572566 |
catgttttcaccggcttttagaaaaaccttgttgatgacatttgagcgagctatacacatggcctctaagggaattggctttggagtagtgactcctttt |
39572665 |
T |
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| Q |
282 |
ccttcagtcatatcaatttcttcctcatttattcttttccaatcaaaaca |
331 |
Q |
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| T |
39572666 |
ccttaactc--atcaatttctttctcacttattattttccaatcgaaaca |
39572713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 457
Target Start/End: Original strand, 12151489 - 12151563
Alignment:
| Q |
383 |
tccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcaaatctctctgg |
457 |
Q |
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| T |
12151489 |
tccaggacaagcccttcttccaaaaccaaatgcaattaacttatttacctcaccttctttttcaaatctctctgg |
12151563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 463
Target Start/End: Original strand, 38974762 - 38974843
Alignment:
| Q |
382 |
ctccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcaaatctctctggcttgaa |
463 |
Q |
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|||| ||||||||||||||||| || ||||||| ||||||||| || ||||||||||| ||||| ||||| |||||||| |
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| T |
38974762 |
ctcctggacaagcccttcttcctaacccaaatgcaatcaacttgtctaactctccttctttctcaaacctctcaggcttgaa |
38974843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 460
Target Start/End: Original strand, 38931612 - 38931689
Alignment:
| Q |
383 |
tccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcaaatctctctggctt |
460 |
Q |
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|||||| ||| |||| ||||| || ||||||| ||| ||||| | ||||| |||||||| ||||||||||||||||| |
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| T |
38931612 |
tccagggcaacccctccttccaaaaccaaatgcaattaacttgtttgcttccccttctttttcaaatctctctggctt |
38931689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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