View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21352_high_3 (Length: 492)

Name: NF21352_high_3
Description: NF21352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21352_high_3
NF21352_high_3
[»] chr8 (15 HSPs)
chr8 (1-476)||(2050206-2050681)
chr8 (1-118)||(2057169-2057286)
chr8 (1-155)||(2032965-2033120)
chr8 (219-356)||(2057403-2057541)
chr8 (2-128)||(10767605-10767731)
chr8 (21-155)||(2028449-2028583)
chr8 (21-130)||(1950435-1950544)
chr8 (1-132)||(2054212-2054346)
chr8 (421-476)||(2029335-2029390)
chr8 (1-106)||(2046397-2046505)
chr8 (1-106)||(2037020-2037128)
chr8 (422-476)||(2057860-2057914)
chr8 (418-472)||(2046708-2046762)
chr8 (419-472)||(1948769-1948822)
chr8 (9-46)||(2022290-2022327)
[»] chr4 (1 HSPs)
chr4 (42-132)||(48908694-48908784)
[»] chr2 (4 HSPs)
chr2 (15-106)||(28786134-28786225)
chr2 (9-68)||(28736617-28736676)
chr2 (9-126)||(28743185-28743302)
chr2 (9-68)||(28713343-28713402)


Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 2050206 - 2050681
Alignment:
Q  1 gatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaacc 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2050206 gatcctttgtttataatagtaattttgatatttatagctctccggcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaacc 2050305  T
Q  101 agaagattttcccgcagtgtgcaggtatgtttcaatgcatgtgtataaaatttatcttatggcaccgacacttcaattaaaggagagtccggtgtctgac 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2050306 agaagattttcccgcagtgtgcaggtatgtttcaaagcatgtgtataaaatttatcttatggcaccgacacttcaattaaaggtgagtccggtgtctgac 2050405  T
Q  201 atgttataattttttatactatattttcaaattattaatggcgttcacttatcattatcaatgccttcgctgctcgtgtatatgttagtgtttcataaga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  2050406 atgttataattttttatactatattttcaaattattaatggcgttcacttatcattatcaattccttcgctactcgtgtatatgttagtgtttcataaga 2050505  T
Q  301 cgtaagttaaggtattcaaacttagccttttcttttaatgaattgcagcgagaccagtctgttggttacaatatatcgtcgcatatttaattggtgttaa 400  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2050506 cctaagttaaggtattcaaacttagccttttcttttaatgaattgcagcgagaccactctgttggttacaatatatcgtcgcatatttaattggtgttaa 2050605  T
Q  401 tactttaatattcattgtttattcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaact 476  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2050606 tactttaatattcattgtttattcttacagagatgtaatactagaatatgggaaacaggtgatgaatctaggaact 2050681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2057169 - 2057286
Alignment:
Q  1 gatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaacc 100  Q
    ||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||   ||||||||||||||||||||||| |||||    
T  2057169 gatcctttgtttacaatagcaatgttgatatttatagctctccggcactcaattggagggatagttttagttgttacttggctcctgatactccaaaacc 2057268  T
Q  101 agaagattttcccgcagt 118  Q
    ||||||||||||||||||    
T  2057269 agaagattttcccgcagt 2057286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 2032965 - 2033120
Alignment:
Q  1 gatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgatactcccaa 97  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||  |||||||||||||   |||||||||| |||    
T  2032965 gatcctttgtttataatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactctcaa 2033064  T
Q  98 accagaagattttcccgcagtgtgcaggtatgtttcaatgcatgtgtataaaatttat 155  Q
    |||| |||| ||||| |  || |||||||||||||  |||||| ||| ||||||||||    
T  2033065 accacaagagtttcctgtggtatgcaggtatgttt--atgcatatgtgtaaaatttat 2033120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 219 - 356
Target Start/End: Original strand, 2057403 - 2057541
Alignment:
Q  219 ctatattttcaaattattaatggcgttcacttatcattatcaatgccttcgctgctcgtgtatatgttagtgtttcataagacgtaagttaaggtattca 318  Q
    |||||||||||||| |||||||| || ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||    
T  2057403 ctatattttcaaatcattaatggtgtccacttgtcattatcaatgccttcggtgctcgtgtatatgttagtctttcataagacgtaagttaaggtactca 2057502  T
Q  319 aacttagccttttctttt-aatgaattgcagcgagacca 356  Q
    ||||| | ||||| ||||   |||||||||| |||||||    
T  2057503 aacttggactttttttttgggtgaattgcagtgagacca 2057541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 10767605 - 10767731
Alignment:
Q  2 atcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaacca 101  Q
    ||||||| |||| |||||||| |||||||||||||| || |||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  10767605 atcctttatttacaatagtaactttgatatttatagctcaccagcacttaattggagggatacttttacatgttacttggctcctgatactcccaaacca 10767704  T
Q  102 gaagattttcccgcagtgtgcaggtat 128  Q
    |||||| |||| | ||| |||||||||    
T  10767705 gaagatattcctgtagtatgcaggtat 10767731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 2028449 - 2028583
Alignment:
Q  21 aattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagattttcccgcagtgt 120  Q
    ||||||||| | ||||| || |||||||||||||||||||||| || | | |||| |||||||||||||||||||||||||||||||||||| |  || |    
T  2028449 aattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccagaagattttcctgttgtat 2028548  T
Q  121 gcaggtatgtttcaatgcatgtgtataaaatttat 155  Q
    ||||||||||||  |||||||  |||| |||||||    
T  2028549 gcaggtatgtttgtatgcatgcatatacaatttat 2028583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 1950544 - 1950435
Alignment:
Q  21 aattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagattttcccgcagtgt 120  Q
    ||||||||| | ||||| || |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| |||||||||| |  || |    
T  1950544 aattttgatttgtatagctcaccagcactcaattggagggatacttgtgcttgttacttggctcctgatactcccaaaccacaagattttcctgttgtat 1950445  T
Q  121 gcaggtatgt 130  Q
    ||||||||||    
T  1950444 gcaggtatgt 1950435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2054212 - 2054346
Alignment:
Q  1 gatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgatactcccaa 97  Q
    |||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||  ||| ||||||||   |||||||||| |||    
T  2054212 gatcctttatttacaatagcaatgttgatatttatagctctccagcactcaattggaaggatagttttggttgtaacttggctccacctgatactctcaa 2054311  T
Q  98 accagaagattttcccgcagtgtgcaggtatgttt 132  Q
    ||||||||| ||||| |  || |||||||||||||    
T  2054312 accagaagagtttcctgtggtatgcaggtatgttt 2054346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 476
Target Start/End: Original strand, 2029335 - 2029390
Alignment:
Q  421 attcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaact 476  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  2029335 attcttgcagagatatactactagaatatgggaaacaggtgatgaatctaggaact 2029390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2046397 - 2046505
Alignment:
Q  1 gatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgatactcccaa 97  Q
    |||| ||| |||| ||||| |||| ||||||||||||  | ||||||||||||||||| |||| |||||| ||||||||||||   |||||||||| |||    
T  2046397 gatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctccacctgatactctcaa 2046496  T
Q  98 accagaaga 106  Q
    |||||||||    
T  2046497 accagaaga 2046505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2037020 - 2037128
Alignment:
Q  1 gatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgatactcccaa 97  Q
    |||| ||| |||| ||||| |||| ||||||||||||  | ||||||||||||||||| |||| |||||| ||||||||||||   ||||||||||  ||    
T  2037020 gatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctccacctgatactcttaa 2037119  T
Q  98 accagaaga 106  Q
    |||||||||    
T  2037120 accagaaga 2037128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 2057860 - 2057914
Alignment:
Q  422 ttcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaact 476  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  2057860 ttcttgcagagatgtgatactataatatgggaaacaagtgatgaatctaggaact 2057914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 472
Target Start/End: Original strand, 2046708 - 2046762
Alignment:
Q  418 tttattcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctagg 472  Q
    ||||||||||||||||| |||||||||||||||| |||||  |||||||||||||    
T  2046708 tttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagg 2046762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 1948822 - 1948769
Alignment:
Q  419 ttattcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctagg 472  Q
    |||||||| ||||||| |||  ||||||||||||||||| ||||||||||||||    
T  1948822 ttattcttacagagatataaccctagaatatgggaaacacgtgatgaatctagg 1948769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 2022290 - 2022327
Alignment:
Q  9 gtttataatagtaattttgatatttatagttctccagc 46  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  2022290 gtttataatagtaattttgatctttatagttcaccagc 2022327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 48908784 - 48908694
Alignment:
Q  42 ccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagattttcccgcagtgtgcaggtatgttt 132  Q
    ||||| |||||||||||||||| ||||   |||| ||||||||||||||||||||||||||||||||||||   ||| |||||||||||||    
T  48908784 ccagcgctcaattggagggatacttttatttgtttcttggctcctgatactcccaaaccagaagattttcctctagtatgcaggtatgttt 48908694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 28786225 - 28786134
Alignment:
Q  15 aatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaaga 106  Q
    ||||| |||||| || ||||||||||  ||||||||||||||||||||| ||||| ||||| |||||||||| || |||| |||||| ||||    
T  28786225 aatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga 28786134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 28736676 - 28736617
Alignment:
Q  9 gtttataatagtaattttgatatttatagttctccagcactcaattggagggatagtttt 68  Q
    ||||||||||||||||||||| | |||||||| |||||||| ||||||||||||| ||||    
T  28736676 gtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatactttt 28736617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 28743302 - 28743185
Alignment:
Q  9 gtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagatt 108  Q
    ||||||||||||||||||||| | |||||||| ||||| || ||||||||||||| ||| || |   |  |||||||| || |||| |||||||||||||    
T  28743302 gtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggatactttggcattgaagatggctcctaatgctccaaaaccagaagatt 28743203  T
Q  109 ttcccgcagtgtgcaggt 126  Q
    | || | ||| |||||||    
T  28743202 tgccagtagtatgcaggt 28743185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 28713402 - 28713343
Alignment:
Q  9 gtttataatagtaattttgatatttatagttctccagcactcaattggagggatagtttt 68  Q
    ||||||||||| ||||||||| | ||||| || |||||||| ||||||||||||| ||||    
T  28713402 gtttataatagcaattttgatttgtatagatcaccagcacttaattggagggatactttt 28713343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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