View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21352_low_1 (Length: 672)
Name: NF21352_low_1
Description: NF21352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21352_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 641; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Complemental strand, 38486698 - 38486042
Alignment:
| Q |
1 |
gttgatcactctagaagctttactaataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486698 |
gttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaaggg |
38486599 |
T |
|
| Q |
101 |
tttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctca |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38486598 |
tttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacataaaccaagcaagagaagaaacgaaacctgtaaatatatgttccctca |
38486499 |
T |
|
| Q |
201 |
ctcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486498 |
ctcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcat |
38486399 |
T |
|
| Q |
301 |
atcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaattttaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486398 |
atcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaattttaca |
38486299 |
T |
|
| Q |
401 |
cggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacctcatcaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486298 |
cggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacctcatcaa |
38486199 |
T |
|
| Q |
501 |
cataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctgacaagc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486198 |
cataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctgacaagc |
38486099 |
T |
|
| Q |
601 |
aatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaact |
657 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486098 |
gatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaact |
38486042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 394
Target Start/End: Complemental strand, 3685886 - 3685536
Alignment:
| Q |
44 |
aaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcct |
143 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || ||||| || | ||||||||||||||||| || | ||| || | || |||||||||| || | |
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| T |
3685886 |
aaccaaaatctgtcaaacacatccggatgaccgtagtgcatccgtactttcaaagggtttgccagaaatcgctggcccagtgtcacaaaacttgtctctt |
3685787 |
T |
|
| Q |
144 |
gagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaa |
243 |
Q |
| |
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| | |||||||||||||||||| || ||||| | ||||| ||||||| || | || |||||||| ||||| || ||||||| ||| ||||| |
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| T |
3685786 |
gggatgacatgaaccaagcaagcgacgaaacagagcctgtgaatatattctcacgaacccccaaaatggttggcttcttgataccatggtagacattgaa |
3685687 |
T |
|
| Q |
244 |
ttcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcg |
343 |
Q |
| |
|
|| ||||| ||||| || | ||| || || |||||||| || ||||| || |||||||| || || ||||||||||| || || || || || || || |
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| T |
3685686 |
ctcctccaacagattccgcattttgagagcttcctcaaaataattgtcttgattcatatctatggtctgaattgcatcaccccgcgtaaagatcattgca |
3685587 |
T |
|
| Q |
344 |
tggttttgattttccggctttccttctccaagtttcaagggacctggcaat |
394 |
Q |
| |
|
|| || ||||||||||| || |||||||||||||| || ||||| |||||| |
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|
| T |
3685586 |
tgattctgattttccggtttcccttctccaagttttaaaggaccaggcaat |
3685536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 30295459 - 30295375
Alignment:
| Q |
291 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
375 |
Q |
| |
|
|||||||||||||||| ||||| | || || || |||||| |||| || || | |||||||||||| ||||| ||||||||||| |
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| T |
30295459 |
cctggttcatatcaattgtttggagggcttcgccacgagtgtatattattgcattgttttgattttcaggcttcccttctccaag |
30295375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 648
Target Start/End: Complemental strand, 30121097 - 30120456
Alignment:
| Q |
1 |
gttgatcactctagaagctttactaataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaaggg |
100 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
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|
| T |
30121097 |
gttgatcactctggaagctttgctgataccacctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatgcattcgaactttcaaagga |
30120998 |
T |
|
| Q |
101 |
tttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctca |
200 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||| ||||| |||||||||||||| ||||||||||| ||| | || || || || |||||||| | |
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|
| T |
30120997 |
tttgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgacatgaaccaggcaagagaggacacggagccagtgaaaatgtgttccctga |
30120898 |
T |
|
| Q |
201 |
ctcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcat |
300 |
Q |
| |
|
| || ||||| |||||||| || | ||| |||||| | | | ||||| | |||||||| | || ||||| |||||||||||||| ||||| ||||| |
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|
| T |
30120897 |
cacctaaaattgttggtttccggacaccgtagtaacgtctatactcttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcat |
30120798 |
T |
|
| Q |
301 |
atcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaattttaca |
400 |
Q |
| |
|
|| ||||| || | || |||||||||||||| ||||||||||| |||||||| || |||||||| || || || ||||| ||||| |||| ||| || |
|
|
| T |
30120797 |
gtctatagtctgcaaagcgtccccgcgagtgaagatgatggcgtgattttgattctcgggctttccctccccgagcttcaatggacccggcagtttgact |
30120698 |
T |
|
| Q |
401 |
cggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacctcatcaa |
500 |
Q |
| |
|
| ||||| ||| |||||| | |||| ||| || |||||||||||||| ||||| |||| ||| ||| | ||||| || || |||||| | |
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|
| T |
30120697 |
ctgtatacttcaacctccttttccaactgctgatcatacttaacaaggacagagaaata------ctccttcccgtcccttccagtagttctctcatcca |
30120604 |
T |
|
| Q |
501 |
cataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctgacaagc |
600 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||||| |||||||||||| || ||||| |||||||| || |||| ||||||||||| ||||||||||| |
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|
| T |
30120603 |
catatgcaactcgaagagcttcattgtttttcattagatacaaaatttcctcagcatggggatccttcttttccttctgagttccataaatctgacaagc |
30120504 |
T |
|
| Q |
601 |
aatcacatatgtgaatttcattaatgcagttccatagtcatggccttt |
648 |
Q |
| |
|
|| |||||||||||||||||| || ||||| ||||| || |||||||| |
|
|
| T |
30120503 |
aaccacatatgtgaatttcatcaaagcagtcccatactcgtggccttt |
30120456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 34191701 - 34191617
Alignment:
| Q |
291 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
375 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || || |||||||| || || || ||||| || || ||||||||||| ||||| |
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| T |
34191701 |
cctgattcatatcaatagtttgaagtgcatcaccacgggtgaatattatcgcatgattttggttctcaggctttccttcaccaag |
34191617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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