View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21352_low_7 (Length: 309)

Name: NF21352_low_7
Description: NF21352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21352_low_7
NF21352_low_7
[»] chr7 (5 HSPs)
chr7 (3-292)||(8624-8913)
chr7 (100-292)||(47799605-47799797)
chr7 (100-170)||(8402-8472)
chr7 (23-98)||(8984-9062)
chr7 (15-98)||(47800061-47800146)
[»] chr6 (2 HSPs)
chr6 (100-292)||(1770411-1770603)
chr6 (15-98)||(1770666-1770751)
[»] chr1 (3 HSPs)
chr1 (3-98)||(42645910-42646005)
chr1 (107-176)||(42645694-42645763)
chr1 (32-97)||(49420854-49420921)
[»] chr8 (3 HSPs)
chr8 (3-98)||(33688303-33688398)
chr8 (32-98)||(35839803-35839870)
chr8 (100-176)||(33688565-33688641)
[»] chr3 (2 HSPs)
chr3 (7-98)||(33862066-33862158)
chr3 (32-94)||(54901314-54901378)
[»] chr4 (2 HSPs)
chr4 (32-98)||(51412677-51412745)
chr4 (37-94)||(33463762-33463821)
[»] chr5 (1 HSPs)
chr5 (32-94)||(6007553-6007617)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 292
Target Start/End: Original strand, 8624 - 8913
Alignment:
Q  3 ttgtatggagaagagttgcaggttgtggttggaggagagagaattgttggggaagatagtgtgaaaaattcagtgttgagagaacatgataagagtacta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8624 ttgtatggagaagagttgcaggttgtggttggaggagagagaattgttggggaagatagtgtgaaaaattcagtgttgagagaacatgataagagtacta 8723  T
Q  103 ttttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaataatttgttaaaggtcaaagattaaaagattt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8724 ttttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaataatttgttaaaggtcaaagattaaaagattt 8823  T
Q  203 cttgcatgtatgtttcttgaaataatctaaagcaataatgaaaagctattaaagattaaagatttgttttatatttttgaaacattaatc 292  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8824 cttgcatgtgtgtttcttgaaataatctaaagcaataatgaaaagctattaaagattaaagatttgttctatatttttgaaacattaatc 8913  T

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Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 47799605 - 47799797
Alignment:
Q  100 ctattttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaataatttgttaaaggtcaaagattaaaaga 199  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  47799605 ctatcttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaatgattcgttaaaggtcaaagattaaaaga 47799704  T
Q  200 tttcttgcatgtatgtttcttgaaataatctaaagcaataatgaaaagctattaaagattaaagatttgttttatatttttgaaacattaatc 292  Q
    |||||||| ||| ||||||||| |||||| | ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47799705 tttcttgcgtgtgtgtttcttgcaataatttgaagtaataaagaaaagctattaaagattaaagatttgttttctatttttgaaacattaatc 47799797  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 8402 - 8472
Alignment:
Q  100 ctattttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaa 170  Q
    ||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| ||||||||||||||    
T  8402 ctattttcagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaagattaaa 8472  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 8984 - 9062
Alignment:
Q  23 ggttgtggttggaggagagagaattgttggggaagatagtgtg---aaaaattcagtgttgagagaacatgataagagt 98  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||| ||| | |||||||||||||||||    
T  8984 ggttgtggttggaggagagagaattgttggggaagataatgtgaaaaaaaattcaatgtagggagaacatgataagagt 9062  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 47800061 - 47800146
Alignment:
Q  15 gagttgcaggttgtggttggaggagagagaattgttggggaagatagtgtg--aaaaattcagtgttgagagaacatgataagagt 98  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||| ||||  ||||||||| ||| | |||||||||||||||||    
T  47800061 gagttgctggttgtggttggaggagagagaattgttagtgaagataatgtgaaaaaaattcaatgtagggagaacatgataagagt 47800146  T

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Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 1770411 - 1770603
Alignment:
Q  100 ctattttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaataatttgttaaaggtcaaagattaaaaga 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  1770411 ctattttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaatgattcgttaaaggtcaaagattaaaaga 1770510  T
Q  200 tttcttgcatgtatgtttcttgaaataatctaaagcaataatgaaaagctattaaagattaaagatttgttttatatttttgaaacattaatc 292  Q
    |||||||| ||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1770511 tttcttgcgtgtgtgtttcttgcaataatctgaagcaataaagaaaagctattaaagattaaagatttgttttctatttttgaaacattaatc 1770603  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 1770666 - 1770751
Alignment:
Q  15 gagttgcaggttgtggttggaggagagagaattgttggggaagatagtgtg--aaaaattcagtgttgagagaacatgataagagt 98  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||  ||||||||| ||| | |||||||||||||||||    
T  1770666 gagttgctggttgtggttggaggagagagaattgttggggaagataatgtgaaaaaaattcaatgtagggagaacatgataagagt 1770751  T

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Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 42645910 - 42646005
Alignment:
Q  3 ttgtatggagaagagttgcaggttgtggttggaggagagagaattgttggggaagatagtgtgaaaaattcagtgttgagagaacatgataagagt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42645910 ttgtatggagaagagttgcaggttgtggttggaggagagagaattgttggggaagatagtgtgaaaaattcagtgttgagagaacatgataagagt 42646005  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 42645694 - 42645763
Alignment:
Q  107 cagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaataattt 176  Q
    |||||||| |||||| |||| || ||||||||||||||||||||||||| |||||||||||||| |||||    
T  42645694 cagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaagattaaagaattt 42645763  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 49420854 - 49420921
Alignment:
Q  32 tggaggagagagaattgttggggaagatagtgtgaaaa--attcagtgttgagagaacatgataagag 97  Q
    ||||||| | ||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||    
T  49420854 tggaggacatagaattgttggagaagatagtgtgaaaaaaattcagtgtggagagaacatgataagag 49420921  T

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Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 33688398 - 33688303
Alignment:
Q  3 ttgtatggagaagagttgcaggttgtggttggaggagagagaattgttggggaagatagtgtgaaaaattcagtgttgagagaacatgataagagt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33688398 ttgtatggagaagagttgcaggttgtggttggaggagagagaattgttggggaagatagtgtgaaaaattcagtgttgagagaacataataagagt 33688303  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 35839870 - 35839803
Alignment:
Q  32 tggaggagagagaattgttggggaagatagtgtgaaaaa-ttcagtgttgagagaacatgataagagt 98  Q
    ||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  35839870 tggaggagatagaatagttgggaaagatagtgtgaaaaaattcagtgttgagagaacatgataagagt 35839803  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 33688641 - 33688565
Alignment:
Q  100 ctattttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaataattt 176  Q
    |||||| |||||||| |||||| |||| || |||||||||||| |||||||||||| |||||||||||||| |||||    
T  33688641 ctatttccagtttgtgtttctctttaccaattctcttgtgaattattaaagaaaagctgttaaagattaaaaaattt 33688565  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 33862066 - 33862158
Alignment:
Q  7 atggagaagagttgcaggttgtggttggaggagagagaattgttggggaagatagtg-tgaaaaattcagtgttgagagaacatgataagagt 98  Q
    |||||| |||||||  |||||||||||||||||  ||||||||||||||||||| || | ||||||| ||||| |||||||||||||||||||    
T  33862066 atggaggagagttgttggttgtggttggaggagcaagaattgttggggaagataatgttaaaaaattaagtgtagagagaacatgataagagt 33862158  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 54901314 - 54901378
Alignment:
Q  32 tggaggagagagaattgttggggaagatagtgtgaaa--aattcagtgttgagagaacatgataa 94  Q
    |||| |||||||||||||| || ||||||||||||||  |||||||||||| |||||||||||||    
T  54901314 tggaagagagagaattgtttggaaagatagtgtgaaaataattcagtgttgtgagaacatgataa 54901378  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 51412745 - 51412677
Alignment:
Q  32 tggaggagagagaattgttggggaagatagtgtgaaaaa--ttcagtgttgagagaacatgataagagt 98  Q
    |||| |||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  51412745 tggaagagatagaactgttggggaagatagtgtgaaaaaaattcagtgttgagagaacatgataagagt 51412677  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 33463821 - 33463762
Alignment:
Q  37 gagagagaattgttggggaagatagtgtgaaa--aattcagtgttgagagaacatgataa 94  Q
    |||||||||||||| || ||||||||||||||  |||||||||||| |||||||||||||    
T  33463821 gagagagaattgtttggaaagatagtgtgaaaataattcagtgttgtgagaacatgataa 33463762  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 6007553 - 6007617
Alignment:
Q  32 tggaggagagagaattgttggggaagatagtgtgaaa--aattcagtgttgagagaacatgataa 94  Q
    |||| |||||||||||||| || ||||||||||||||  |||||||||||| |||||||||||||    
T  6007553 tggaagagagagaattgtttggaaagatagtgtgaaaataattcagtgttgtgagaacatgataa 6007617  T

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