View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21353_high_2 (Length: 515)
Name: NF21353_high_2
Description: NF21353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21353_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 28118758 - 28119256
Alignment:
| Q |
1 |
agaggaaaagtgaatcatttaaggtatatataaccaataaccaatcttatataaatttttatcttatgtttttcttcacgcaagaagcaaaaatgtttag |
100 |
Q |
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| T |
28118758 |
agaggaaaagtgaatcatttaaggtatatataaccaataaccaatcttatataaatttttatcttatgtttttcttcacgcaagaagcaaaaatgtttag |
28118857 |
T |
|
| Q |
101 |
gttaagcctttgctccttcgcgtggctttaaagaatttttcttaaatttcctcattaaatcactagctatataaccccaccaaatattcctacaaacact |
200 |
Q |
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| T |
28118858 |
gttaagcctttgctccttcgcgtggctttaaagaatttttcttaaatttcctcattaaatcactagctatataaccccaccaaatattcctacaaacact |
28118957 |
T |
|
| Q |
201 |
accttaattctttcctttcaatttttccttcatagatcatatgactctcacaaatttaatcaaaccctagnnnnnnnaaacctaattattacatctnnnn |
300 |
Q |
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| T |
28118958 |
accttaattctttcctttcaatttttccttcatagatcatatgactctcacaaatttaatcaaaccctagtttttttaaacctaattattacatctaaaa |
28119057 |
T |
|
| Q |
301 |
nnnnccatagctatagacattnnnnnnnnnnnnnnnntattaattaccctttagagatgagtctaaactctagtggcagcggaagcagtggtggcggcgg |
400 |
Q |
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| T |
28119058 |
aaaaccatagctatagacattaaaacaaaaacaaaaatattaattaccctttagagatgagtctaaactctagtggcagcggaagcggtggtggcggcgg |
28119157 |
T |
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| Q |
401 |
aagcagtggaagcccttgtggggcttgcaagtttttgaggaggaagtgtgtgcaagggtgtgtttttgctccatacttcgattcggagcatggaacaac |
499 |
Q |
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| T |
28119158 |
aagcagtggaagcccttgtggggcttgcaagtttttgaggaggaagtgtgtgcaagggtgtgtttttgctccatacttcgattcggagcatggaacaac |
28119256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 490
Target Start/End: Complemental strand, 13270747 - 13270669
Alignment:
| Q |
412 |
gcccttgtggggcttgcaagtttttgaggaggaagtgtgtgcaagggtgtgtttttgctccatacttcgattcggagca |
490 |
Q |
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|||||||||| || |||||||||||||| ||||||||| | | || ||| ||||||| || ||||||||||||||||| |
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| T |
13270747 |
gcccttgtggcgcgtgcaagtttttgagaaggaagtgtatcccgggatgtatttttgcgccttacttcgattcggagca |
13270669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 13286790 - 13286827
Alignment:
| Q |
414 |
ccttgtggggcttgcaagtttttgaggaggaagtgtgt |
451 |
Q |
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| T |
13286790 |
ccttgtggtgcttgcaagtttttgaggagaaagtgtgt |
13286827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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