View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21353_high_4 (Length: 333)
Name: NF21353_high_4
Description: NF21353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21353_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 32594697 - 32595004
Alignment:
| Q |
18 |
aatacttacatacttaaaacacattcattcatccataacagatgtttcatacatagtcttacaaaagttggacatagccaaacaaatcacaaagtgatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32594697 |
aatacttacatacttaaaacacatccattcatccataacagatgtttcatacatagtcttacaaaagttggacatagccaaacaaatcacaaagtgatgt |
32594796 |
T |
|
| Q |
118 |
caattcaacaagtgttgttacaaaagttggacttagtcaagctaatcacaaaataaaacacacatcaataagtagtcttacacaagtaacataagttgga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32594797 |
caattcaacaagtgttgttacaaaagttggacttagtcaagctaatcacaaaataaaacacacatcaataagtagtcttacacaagtaacataagttgga |
32594896 |
T |
|
| Q |
218 |
cttagccaaacacaaaacacaagtaacataagttacataattagcactaaatatatttcacattctccacacttcttaacaaggccaagcagcttccacc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32594897 |
cttagccaaacacaaaacacaagtaacataagttacataattagcactaaatatatttcacattctccacacttcttaacaaggccaagcagcttccacc |
32594996 |
T |
|
| Q |
318 |
ttcatctc |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
32594997 |
ttcatctc |
32595004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 22368530 - 22368837
Alignment:
| Q |
18 |
aatacttacatacttaaaacacattcattcatccataacagatgtttcatacatagtcttacaaaagttggacatagccaaacaaatcacaaagtgatgt |
117 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
22368530 |
aatacatacataattaaaacacattcattcaaccataataggtgtttcatacatagtcttacaaaagttggacataaccaagcaaatcacaaagtgatgt |
22368629 |
T |
|
| Q |
118 |
caattcaacaagtgttgttacaaaagttggacttagtcaagctaatcacaaaataaaacacacatcaataagtagtcttacacaagtaacataagttgga |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
22368630 |
caattgaacaagtgttgttacaaaagttggacttatccaagctaatcacaaaataaaagacacatcaataagttgtcttacacaagtaatataagttgga |
22368729 |
T |
|
| Q |
218 |
cttagccaaacacaaaacacaagtaacataagttacataattagcactaaatatatttcacattctccacacttcttaacaaggccaagcagcttccacc |
317 |
Q |
| |
|
|||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
22368730 |
cttagccaaaaaacaaaaaccagtaacataagttacataattagcactaaatatatttcacattctccacgcttcttaacaaggccaagcagcttccacc |
22368829 |
T |
|
| Q |
318 |
ttcatctc |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
22368830 |
ttcatctc |
22368837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 13045925 - 13046228
Alignment:
| Q |
18 |
aatacttacatacttaaaacacattcattcatccataacagatgtttcatacatagtcttacaaaagttggacatagccaaacaaatcacaaagtgatgt |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||| |||||||| ||||| |
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|
| T |
13045925 |
aatacttgaatacttaaaacacattcattcatccataacagatgtttcatacagagtcttacaaaagtaggacttagccaagcaattcacaaagggatgt |
13046024 |
T |
|
| Q |
118 |
caattcaacaagtgttgttacaaaagttggacttagtcaagctaatcacaaaataaaacacacatcaataagtagtcttacacaagtaacataagttgga |
217 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13046025 |
caattcaacaagtgttattagataagttggacttagccaagaaaatcacaaaataaaacacacatcaataagtagtcttacacaagtaacataagttgga |
13046124 |
T |
|
| Q |
218 |
cttagccaaacacaaaacacaagtaacataagttacataattagcactaaatatatttcacattctccacacttcttaacaaggccaagcagcttccacc |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |
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|
| T |
13046125 |
cttagccaaacacaaaacacaat----ataagttacataattagcactaaatatatttcacattctccacactttttaacaaggtgaagcatcttccacc |
13046220 |
T |
|
| Q |
318 |
ttcatctc |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
13046221 |
ttcatctc |
13046228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 34795402 - 34795476
Alignment:
| Q |
250 |
ttacataattagcactaaatatatttcacattctccacacttcttaacaaggccaagcagcttccaccttcatct |
324 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34795402 |
ttacatcattaacactaaatatacttcacattttcaacacttcttaacaaggccaagcagcttccacctgcatct |
34795476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 191 - 324
Target Start/End: Complemental strand, 51018352 - 51018213
Alignment:
| Q |
191 |
agtcttacacaagtaacataagttggacttagccaaacacaaaacacaagtaac---ataagt---tacataattagcactaaatatatttcacattctc |
284 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||||||||||| |||||| | | | || |||||||||| ||||||||||| |||||||| || |
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|
| T |
51018352 |
agtcttaaacaagttacataagttggactttgccaaacacaaaatacaagtcagtggaaatgtcattacataattaacactaaatatacttcacattttc |
51018253 |
T |
|
| Q |
285 |
cacacttcttaacaaggccaagcagcttccaccttcatct |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
51018252 |
aacacttcttaacaaggccaagcagcttccacctgcatct |
51018213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 51018470 - 51018398
Alignment:
| Q |
52 |
ataacagatgtttcatacatagtcttacaaaagttggacatagccaaacaaatcacaaagtgatgtcaattcaa |
125 |
Q |
| |
|
|||||||||||| ||||| | || |||||||| |||||| ||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
51018470 |
ataacagatgtt-catactttgttttacaaaatttggacttagccaagcaaatcacaaagttatgacaattcaa |
51018398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 7310577 - 7310503
Alignment:
| Q |
250 |
ttacataattagcactaaatatatttcacattctccacacttcttaacaaggccaagcagcttccaccttcatct |
324 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| || |||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
7310577 |
ttacatcattaacactaaatatacttcacattttcaacacttcttaacaaggtcaagcagcttccacctgcatct |
7310503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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