View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21353_high_5 (Length: 277)
Name: NF21353_high_5
Description: NF21353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21353_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 48285439 - 48285193
Alignment:
| Q |
19 |
aggaaaatcagtggtttttcaacttttattattttctgatggacagcagtacgaggcatttgggtcgtaaaagtgagtaataagtgaatcagatttgtct |
118 |
Q |
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| T |
48285439 |
aggaaaatcagtggtttttcaacttttattattttctgatggacagcagtacgaggcatttgggtcgtaaaagtgagtaatcagtgaatcagatttgtct |
48285340 |
T |
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| Q |
119 |
tggtgtgtggctagttccaatttaagggattattatcttgatgctatactccctttaataatggtacaaagcatttaggagtgctttatagaatcttttc |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48285339 |
tggtgtgtggctagttccaatttaaggg-ttattatcttgatgctatactccctttaataatggtacaaagcatttaggagtgctttatagaatcttttc |
48285241 |
T |
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| Q |
219 |
tttctgttaatcttgtcccacttgtttaggtgtgtgttctctcttctt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48285240 |
tttctgttaatcttgtcccacttgtttaggtgtgtgttctctcttctt |
48285193 |
T |
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