View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21353_high_6 (Length: 267)
Name: NF21353_high_6
Description: NF21353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21353_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 31778083 - 31778320
Alignment:
| Q |
15 |
cacagatgattgaggaacttgacggtgtggaaaaagcatattccgaaataataatctataagaaaaatggaggaatagatctttagttagtttttgttct |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31778083 |
cacagatgattgaggaacttgacggtgtggaaaaagcatattccgaaataataatctataagaaaaatggaggaatagatcattagttagtttttgttct |
31778182 |
T |
|
| Q |
115 |
caattattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgat--tacgaagcatatgataaattaataaac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
31778183 |
caattattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattatacgaagcatatgataaactaataaat |
31778282 |
T |
|
| Q |
213 |
catcttgtaattatgaatgttgcagctttgacaatttt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
31778283 |
catcttgtaattatgaatgttgcagctttgacaatttt |
31778320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 30651737 - 30651968
Alignment:
| Q |
15 |
cacagatgattgaggaacttgacggtgtggaaaaagcatattccgaaataataatctataagaaaaatggaggaatagatctttagttagtttttgttct |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
30651737 |
cacagatgattgagaaacttgacggtgtggaaaaagcatattccaaaataataatctataagaaaaatggaggaataaatcattagttagtttttgttct |
30651836 |
T |
|
| Q |
115 |
caattattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattacgaagcatatgataaattaataaacca |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30651837 |
caattattaggatcattttatcttaaataataaaaagtggtttatcaatcacccattatcatatttatgattacgaagcatatgataaattaataaacca |
30651936 |
T |
|
| Q |
215 |
tcttgtaattatgaatgttgcagctttgacaa |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
30651937 |
tcttgtaattatgaatgttgcagctttgacaa |
30651968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 25628905 - 25629025
Alignment:
| Q |
130 |
ttttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattacgaagcatatgataaattaataaaccatcttgtaattatgaa |
229 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
25628905 |
ttttatctttaataataaaaagtggtttgtcaatcaccaattatcatatttatgattacgaagcatatgaaaaattaataaaccattttgtaattatgaa |
25629004 |
T |
|
| Q |
230 |
tgttgcagctttgacaatttt |
250 |
Q |
| |
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| |||||||||| || ||||| |
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|
| T |
25629005 |
ttttgcagctttaaccatttt |
25629025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 25628362 - 25628478
Alignment:
| Q |
15 |
cacagatgattgaggaacttgacggtgtggaaaaagcatattccgaaataataatctataagaaaaatggaggaatagatctttagttagttt---ttgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || ||||||| ||| ||| ||||||||||||||||||||||| ||| ||||||||||| |||| |
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| T |
25628362 |
cacagatgattgaggaacttgacggtgttgaagaaacatattcaagaattatattctataagaaaaatggaggaataaatcattagttagtttttgttgt |
25628461 |
T |
|
| Q |
112 |
tctcaattattaggatc |
128 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
25628462 |
tctcaattattaggatc |
25628478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 30250112 - 30250160
Alignment:
| Q |
130 |
ttttatcttgaataataaaaagtggtttgtcaatcacccattatcatat |
178 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
30250112 |
ttttaccttgagtaataaaaagtggtttgtcaatcactcattatcatat |
30250160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 4028209 - 4028321
Alignment:
| Q |
118 |
ttattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattacgaagcatatgataaattaataaaccatct |
217 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||| | || |||||| ||||||||||| ||| | |
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| T |
4028209 |
ttattaggatcattttaccttggataataaaaagtggtttgtcaatcattcattatcataattatgattatgcagtatatgaaaaattaataaagcattt |
4028308 |
T |
|
| Q |
218 |
tgtaattatgaat |
230 |
Q |
| |
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| ||||||||||| |
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|
| T |
4028309 |
tataattatgaat |
4028321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 29352201 - 29352108
Alignment:
| Q |
118 |
ttattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattacgaagcatatgataaattaataaa |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| ||||| ||| | ||||| ||| |||| |||||| |
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|
| T |
29352201 |
ttattaggatcattttaccttgaataataaaaagtggtttgtaaatcactcattatcataattatggttatgcagcatttgaaaaatcaataaa |
29352108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 34325616 - 34325655
Alignment:
| Q |
118 |
ttattaggatcattttatcttgaataataaaaagtggttt |
157 |
Q |
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||||||||||||||||| |||| ||||||||||||||||| |
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| T |
34325616 |
ttattaggatcattttaccttggataataaaaagtggttt |
34325655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 1146803 - 1146863
Alignment:
| Q |
124 |
ggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatga |
184 |
Q |
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||||||||||| |||| ||||||||| || ||||||| ||||||||||||||| |||||| |
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| T |
1146803 |
ggatcattttaacttgtataataaaatatgatttgtcactcacccattatcataattatga |
1146863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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